Examples with AlreadyExistException com.odysseusinc.arachne.portal.exception.AlreadyExistException used on opensource projects

Example 1 with AlreadyExistException

use of com.odysseusinc.arachne.portal.exception.AlreadyExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method addParticipant.

@Override
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_CONTRIBUTOR)")
public UserStudy addParticipant(IUser createdBy, Long studyId, Long participantId, ParticipantRole role) throws NotExistException, AlreadyExistException {
    Study study = Optional.ofNullable(studyRepository.findOne(studyId)).orElseThrow(() -> new NotExistException(EX_STUDY_NOT_EXISTS, Study.class));
    IUser participant = Optional.ofNullable(userService.findOne(participantId)).orElseThrow(() -> new NotExistException(EX_USER_NOT_EXISTS, User.class));
    UserStudy studyLink = userStudyRepository.findOneByStudyIdAndUserId(study.getId(), participant.getId());
    if (studyLink == null) {
        // If user is invited for first time - create new link
        studyLink = new UserStudy();
    } else if (studyLink.getStatus().isPendingOrApproved()) {
        // Otherwise - invitation is pending or was already accepted. Cannot change or recreate
        throw new AlreadyExistException(EX_PARTICIPANT_EXISTS);
    }
    studyLink.setCreatedBy(createdBy);
    studyLink.setUser(participant);
    studyLink.setStudy(study);
    studyLink.setRole(role);
    studyLink.setCreated(new Date());
    studyLink.setStatus(ParticipantStatus.PENDING);
    studyLink.setDeletedAt(null);
    studyLink.setComment(null);
    studyLink.setToken(UUID.randomUUID().toString().replace("-", ""));
    userStudyRepository.save(studyLink);
    arachneMailSender.send(new InvitationCollaboratorMailSender(WebSecurityConfig.getDefaultPortalURI(), participant, studyLink));
    return studyLink;
}

Example 2 with AlreadyExistException

use of com.odysseusinc.arachne.portal.exception.AlreadyExistException in project ArachneCentralAPI by OHDSI.

the class EstimationPreprocessor method attachEstimationAnalysisCode.

private void attachEstimationAnalysisCode(Analysis analysis) {
    Resource resource = new ClassPathResource(ESTIMATION_ANALYSIS_SOURCE);
    try (final InputStream in = resource.getInputStream()) {
        final MultipartFile analysisFile = new MockMultipartFile(ANALYSIS_BUNDLE_FILENAME, ANALYSIS_BUNDLE_FILENAME, null, in);
        analysisService.saveFile(analysisFile, analysis.getAuthor(), analysis, analysisFile.getName(), false, null);
    } catch (IOException e) {
        LOGGER.error("Failed to add file", e);
        throw new UncheckedIOException(e);
    } catch (AlreadyExistException e) {
        LOGGER.error("Failed to save file", e);
    }
}

Example 3 with AlreadyExistException

use of com.odysseusinc.arachne.portal.exception.AlreadyExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method addParticipant.

@Override
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_CONTRIBUTOR)")
public UserStudy addParticipant(IUser createdBy, Long studyId, Long participantId, ParticipantRole role, String message) throws NotExistException, AlreadyExistException {
    Study study = Optional.ofNullable(studyRepository.getOne(studyId)).orElseThrow(() -> new NotExistException(EX_STUDY_NOT_EXISTS, Study.class));
    IUser participant = Optional.ofNullable(userService.findOne(participantId)).orElseThrow(() -> new NotExistException(EX_USER_NOT_EXISTS, User.class));
    UserStudy studyLink = userStudyRepository.findOneByStudyIdAndUserId(study.getId(), participant.getId());
    if (studyLink == null) {
        // If user is invited for first time - create new link
        studyLink = new UserStudy();
    } else if (studyLink.getStatus().isPendingOrApproved()) {
        // Otherwise - invitation is pending or was already accepted. Cannot change or recreate
        throw new AlreadyExistException(EX_PARTICIPANT_EXISTS);
    }
    studyLink.setCreatedBy(createdBy);
    studyLink.setUser(participant);
    studyLink.setStudy(study);
    studyLink.setRole(role);
    studyLink.setCreated(new Date());
    studyLink.setStatus(ParticipantStatus.PENDING);
    studyLink.setDeletedAt(null);
    studyLink.setComment(null);
    studyLink.setInviteMessage(message);
    studyLink.setToken(UUID.randomUUID().toString().replace("-", ""));
    userStudyRepository.save(studyLink);
    arachneMailSender.send(new InvitationCollaboratorMailSender(WebSecurityConfig.getDefaultPortalURI(), participant, studyLink, message));
    return studyLink;
}

Example 4 with AlreadyExistException

use of com.odysseusinc.arachne.portal.exception.AlreadyExistException in project ArachneCentralAPI by OHDSI.

the class AnalysisFilesSavingServiceImpl method saveFiles.

@Override
@PreAuthorize("hasPermission(#analysis, " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).UPLOAD_ANALYSIS_FILES)")
public List<AnalysisFile> saveFiles(List<UploadFileDTO> files, IUser user, A analysis) throws IOException {
    List<String> errorFileMessages = new ArrayList<>();
    List<AnalysisFile> savedFiles = new ArrayList<>();
    for (UploadFileDTO f : files) {
        try {
            if (StringUtils.isNotBlank(f.getLink())) {
                savedFiles.add(saveFileByLink(f.getLink(), user, analysis, f.getLabel(), f.getExecutable()));
            } else if (f.getFile() != null) {
                savedFiles.add(saveFile(f.getFile(), user, analysis, f.getLabel(), f.getExecutable(), null));
            } else {
                errorFileMessages.add(String.format("Invalid file: \"%s\"", f.getLabel()));
            }
        } catch (AlreadyExistException e) {
            errorFileMessages.add(e.getMessage());
        }
    }
    if (!errorFileMessages.isEmpty()) {
        throw new ValidationRuntimeException("Failed to save files", ImmutableMap.of("file", errorFileMessages));
    }
    return savedFiles;
}

Example 5 with AlreadyExistException

use of com.odysseusinc.arachne.portal.exception.AlreadyExistException in project ArachneCentralAPI by OHDSI.

the class BaseAnalysisServiceImpl method sendAnalysisUnlockRequest.

@Override
public AnalysisUnlockRequest sendAnalysisUnlockRequest(Long analysisId, AnalysisUnlockRequest analysisUnlockRequest) throws NotExistException, AlreadyExistException {
    final Optional<A> analysisOptional = analysisRepository.findByIdAndAndLockedTrue(analysisId);
    final Analysis analysis = analysisOptional.orElseThrow(() -> new NotExistException(ANALYSIS_NOT_FOUND_EXCEPTION, Analysis.class));
    IUser user = analysisUnlockRequest.getUser();
    final AnalysisUnlockRequest existUnlockRequest = analysisUnlockRequestRepository.findByAnalysisAndStatus(analysis, AnalysisUnlockRequestStatus.PENDING);
    if (existUnlockRequest != null) {
        String message = String.format(UNLOCK_REQUEST_ALREADY_EXISTS_EXCEPTION, analysis.getId(), user.getId());
        throw new AlreadyExistException(message);
    }
    analysisUnlockRequest.setAnalysis(analysis);
    final AnalysisUnlockRequest savedUnlockRequest = analysisUnlockRequestRepository.save(analysisUnlockRequest);
    studyService.findLeads((S) savedUnlockRequest.getAnalysis().getStudy()).forEach(lead -> mailSender.send(new UnlockAnalysisRequestMailMessage(WebSecurityConfig.getDefaultPortalURI(), lead, savedUnlockRequest)));
    return savedUnlockRequest;
}