Examples with User com.odysseusinc.arachne.portal.model.User used on opensource projects

Example 1 with User

use of com.odysseusinc.arachne.portal.model.User in project ArachneCentralAPI by OHDSI.

the class ArachnePermissionEvaluator method addPermissions.

public boolean addPermissions(ArachneUser user, HasArachnePermissions hasPermissionsObj) {
    Set<ArachnePermission> allPermissions = getAllPermissions(hasPermissionsObj, user);
    hasPermissionsObj.setPermissions(allPermissions);
    if (hasPermissionsObj instanceof Analysis) {
        final Analysis analysis = (Analysis) hasPermissionsObj;
        final List<SubmissionGroup> submissionGroups = analysis.getSubmissionGroups();
        if (!CollectionUtils.isEmpty(submissionGroups)) {
            submissionGroups.forEach(submissionGroup -> submissionGroup.getSubmissions().forEach(submission -> {
                final Set<ArachnePermission> submissionPermissions = getAllPermissions(submission, user);
                submission.setPermissions(submissionPermissions);
            }));
        }
        final List<AnalysisFile> files = analysis.getFiles();
        if (!CollectionUtils.isEmpty(files)) {
            files.forEach(file -> {
                final Set<ArachnePermission> filePermissions = getAllPermissions(file, user);
                file.setPermissions(filePermissions);
            });
        }
    }
    return true;
}

Example 2 with User

use of com.odysseusinc.arachne.portal.model.User in project ArachneCentralAPI by OHDSI.

the class PaperSpecification method getUserStudyLinkSubquery.

protected Subquery<UserStudyExtended> getUserStudyLinkSubquery(CriteriaQuery<?> query, CriteriaBuilder cb, Path<Long> studyId) {
    final Subquery<UserStudyExtended> userStudyExtendedLinkSubquery = query.subquery(UserStudyExtended.class);
    final Root<UserStudyExtended> userStudyLinkRoot = userStudyExtendedLinkSubquery.from(UserStudyExtended.class);
    userStudyExtendedLinkSubquery.select(userStudyLinkRoot);
    final Path<User> linkUser = userStudyLinkRoot.get(UserStudyExtended_.user);
    final Path<Study> linkStudy = userStudyLinkRoot.get(UserStudyExtended_.study);
    final Path<Long> linkStudyId = linkStudy.get(Study_.id);
    final Path<ParticipantStatus> linkStatus = userStudyLinkRoot.get(UserStudyExtended_.status);
    Predicate userStudyPredicate = cb.and(cb.equal(linkUser, user), cb.equal(linkStudyId, studyId));
    userStudyPredicate = cb.and(userStudyPredicate, cb.notEqual(linkStatus, ParticipantStatus.DELETED));
    userStudyExtendedLinkSubquery.where(userStudyPredicate);
    return userStudyExtendedLinkSubquery;
}

Example 3 with User

use of com.odysseusinc.arachne.portal.model.User in project ArachneCentralAPI by OHDSI.

the class SearchResultToExpertListSearchResultDTOConverter method buildContent.

protected List<UserProfileDTO> buildContent(SearchResult source) {
    List<UserProfileDTO> userProfileDTOList = new ArrayList<>();
    for (Object entity : source.getEntityList()) {
        User user = (User) entity;
        userProfileDTOList.add(conversionService.convert(user, UserProfileDTO.class));
    }
    return userProfileDTOList;
}

Example 4 with User

use of com.odysseusinc.arachne.portal.model.User in project ArachneCentralAPI by OHDSI.

the class DataNodeUtils method isDataNodeOwner.

public static boolean isDataNodeOwner(DataNode dataNode, Long userId) {
    final User user = new User();
    user.setId(userId);
    return isDataNodeOwner(dataNode, user);
}

Example 5 with User

use of com.odysseusinc.arachne.portal.model.User in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method addParticipant.

@Override
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_CONTRIBUTOR)")
public UserStudy addParticipant(IUser createdBy, Long studyId, Long participantId, ParticipantRole role) throws NotExistException, AlreadyExistException {
    Study study = Optional.ofNullable(studyRepository.findOne(studyId)).orElseThrow(() -> new NotExistException(EX_STUDY_NOT_EXISTS, Study.class));
    IUser participant = Optional.ofNullable(userService.findOne(participantId)).orElseThrow(() -> new NotExistException(EX_USER_NOT_EXISTS, User.class));
    UserStudy studyLink = userStudyRepository.findOneByStudyIdAndUserId(study.getId(), participant.getId());
    if (studyLink == null) {
        // If user is invited for first time - create new link
        studyLink = new UserStudy();
    } else if (studyLink.getStatus().isPendingOrApproved()) {
        // Otherwise - invitation is pending or was already accepted. Cannot change or recreate
        throw new AlreadyExistException(EX_PARTICIPANT_EXISTS);
    }
    studyLink.setCreatedBy(createdBy);
    studyLink.setUser(participant);
    studyLink.setStudy(study);
    studyLink.setRole(role);
    studyLink.setCreated(new Date());
    studyLink.setStatus(ParticipantStatus.PENDING);
    studyLink.setDeletedAt(null);
    studyLink.setComment(null);
    studyLink.setToken(UUID.randomUUID().toString().replace("-", ""));
    userStudyRepository.save(studyLink);
    arachneMailSender.send(new InvitationCollaboratorMailSender(WebSecurityConfig.getDefaultPortalURI(), participant, studyLink));
    return studyLink;
}