Examples with UserStudyExtended com.odysseusinc.arachne.portal.model.UserStudyExtended used on opensource projects

Example 1 with UserStudyExtended

use of com.odysseusinc.arachne.portal.model.UserStudyExtended in project ArachneCentralAPI by OHDSI.

the class StudyToStudyMediumDTOConverter method convert.

@Override
public StudyMediumDTO convert(Study source) {
    final StudyMediumDTO studyDTO = new StudyMediumDTO();
    studyDTO.setId(source.getId());
    studyDTO.setTitle(source.getTitle());
    studyDTO.setDescription(source.getDescription());
    studyDTO.setCreated(source.getCreated());
    studyDTO.setStartDate(source.getStartDate());
    studyDTO.setEndDate(source.getEndDate());
    studyDTO.setStatus(conversionService.convert(source.getStatus(), StudyStatusDTO.class));
    final Map<ParticipantRole, List<UserStudyExtended>> studyParticipants = source.getParticipants().stream().collect(Collectors.groupingBy(link -> link.getRole() == ParticipantRole.LEAD_INVESTIGATOR ? LEAD_INVESTIGATOR : CONTRIBUTOR));
    final List<UserStudyExtended> studyLeads = studyParticipants.get(LEAD_INVESTIGATOR);
    if (!CollectionUtils.isEmpty(studyLeads)) {
        studyDTO.setStudyLeads(studyLeads.stream().filter(distinctByKey(p -> p.getUser().getId())).map(studyParticipant -> conversionService.convert(studyParticipant, ParticipantDTO.class)).collect(Collectors.toList()));
    }
    final List<UserStudyExtended> studyContributors = studyParticipants.get(CONTRIBUTOR);
    if (!CollectionUtils.isEmpty(studyContributors)) {
        studyDTO.setStudyParticipants(studyContributors.stream().filter(distinctByKey(p -> p.getUser().getId())).map(studyParticipant -> conversionService.convert(studyParticipant, ParticipantExtendedDTO.class)).collect(Collectors.toList()));
    }
    final List<StudyDataSourceLink> studyDataSources = source.getDataSources();
    studyDTO.setStudyDataSources(studyDataSources.stream().map(studyDataSource -> conversionService.convert(studyDataSource.getDataSource(), DataSourceDTO.class)).collect(Collectors.toList()));
    return studyDTO;
}

Example 2 with UserStudyExtended

use of com.odysseusinc.arachne.portal.model.UserStudyExtended in project ArachneCentralAPI by OHDSI.

the class ParticipantLinkToParticipantDTOConverter method convert.

@Override
public ParticipantDTO convert(ParticipantLink participantLink) {
    ParticipantDTO participantDTO = new ParticipantDTO();
    ParticipantRole role = participantLink.getRole();
    final IUser user = participantLink.getUser();
    participantDTO.setId(user.getUuid());
    participantDTO.setFullName(user.getFullName());
    participantDTO.setRole(new OptionDTO(role.name(), role.toString()));
    participantDTO.setStatus(participantLink.getStatus().toString());
    if (participantLink instanceof UserStudyExtended) {
        if (DECLINED == participantLink.getStatus() && !isEmpty(((UserStudyExtended) participantLink).getComment())) {
            participantDTO.setComment(((UserStudyExtended) participantLink).getComment());
        }
        if (role.equals(ParticipantRole.DATA_SET_OWNER)) {
            DataSource ownedDataSource = ((UserStudyExtended) participantLink).getDataSource();
            participantDTO = new DataOwnerParticipantDTO(participantDTO, ownedDataSource.getId());
        }
    }
    return participantDTO;
}

Example 3 with UserStudyExtended

use of com.odysseusinc.arachne.portal.model.UserStudyExtended in project ArachneCentralAPI by OHDSI.

the class PaperSpecification method getUserStudyLinkSubquery.

protected Subquery<UserStudyExtended> getUserStudyLinkSubquery(CriteriaQuery<?> query, CriteriaBuilder cb, Path<Long> studyId) {
    final Subquery<UserStudyExtended> userStudyExtendedLinkSubquery = query.subquery(UserStudyExtended.class);
    final Root<UserStudyExtended> userStudyLinkRoot = userStudyExtendedLinkSubquery.from(UserStudyExtended.class);
    userStudyExtendedLinkSubquery.select(userStudyLinkRoot);
    final Path<RawUser> linkUser = userStudyLinkRoot.get(UserStudyExtended_.user);
    final Path<Study> linkStudy = userStudyLinkRoot.get(UserStudyExtended_.study);
    final Path<Long> linkStudyId = linkStudy.get(Study_.id);
    final Path<ParticipantStatus> linkStatus = userStudyLinkRoot.get(UserStudyExtended_.status);
    Predicate userStudyPredicate = cb.and(cb.equal(linkUser, user), cb.equal(linkStudyId, studyId));
    userStudyPredicate = cb.and(userStudyPredicate, cb.notEqual(linkStatus, ParticipantStatus.DELETED));
    userStudyExtendedLinkSubquery.where(userStudyPredicate);
    return userStudyExtendedLinkSubquery;
}

Example 4 with UserStudyExtended

use of com.odysseusinc.arachne.portal.model.UserStudyExtended in project ArachneCentralAPI by OHDSI.

the class BaseStudyToStudyDTOConverter method convert.

@Override
public DTO convert(final S source) {
    final DTO studyDTO = super.convert(source);
    final Tenant studyTenant = source.getTenant();
    List<UserStudyExtended> sourceParticipants = new ArrayList<>(source.getParticipants());
    Comparator<UserStudyExtended> comparator = Comparator.comparing(p -> p.getStatus().ordinal());
    sourceParticipants.sort(comparator.thenComparing((p1, p2) -> StringUtils.compare(p1.getUser().getFullName(), p2.getUser().getFullName())));
    for (final UserStudyExtended studyUserLink : sourceParticipants) {
        final ParticipantDTO participantDTO = conversionService.convert(studyUserLink, ParticipantDTO.class);
        if (!studyUserLink.getUser().getTenants().contains(studyTenant)) {
            participantDTO.setCanBeRecreated(Boolean.FALSE);
        }
        studyDTO.getParticipants().add(participantDTO);
    }
    studyDTO.setStatus(conversionService.convert(source.getStatus(), StudyStatusDTO.class));
    studyDTO.setType(conversionService.convert(source.getType(), StudyTypeDTO.class));
    studyDTO.setEndDate(source.getEndDate());
    studyDTO.setStartDate(source.getStartDate());
    studyDTO.setDescription(source.getDescription());
    studyDTO.setCreated(source.getCreated());
    studyDTO.setUpdated(source.getUpdated());
    studyDTO.setPaperId(source.getPaper() == null ? null : source.getPaper().getId());
    studyDTO.setPrivacy(source.getPrivacy());
    proceedAdditionalFields(studyDTO, source);
    return studyDTO;
}

Example 5 with UserStudyExtended

use of com.odysseusinc.arachne.portal.model.UserStudyExtended in project ArachneCentralAPI by OHDSI.

the class BaseStudyToWorkspaceDTOConverter method convert.

@Override
public DTO convert(S source) {
    final DTO workspaceDTO = super.convert(source);
    if (!source.getParticipants().isEmpty()) {
        Optional<UserStudyExtended> leadOptional = source.getParticipants().stream().filter(participant -> participant.getRole().equals(ParticipantRole.LEAD_INVESTIGATOR)).findFirst();
        workspaceDTO.setLeadParticipant(conversionService.convert(leadOptional.orElseThrow(() -> {
            final String message = "Lead investigator for workspace id = " + workspaceDTO.getId() + " doesn't exist";
            return new NotExistException(message, UserStudyExtended.class);
        }), ParticipantDTO.class));
    }
    return workspaceDTO;
}