Examples with ParticipantRole com.odysseusinc.arachne.portal.model.ParticipantRole used on opensource projects

Example 1 with ParticipantRole

use of com.odysseusinc.arachne.portal.model.ParticipantRole in project ArachneCentralAPI by OHDSI.

the class StudyToStudyMediumDTOConverter method convert.

@Override
public StudyMediumDTO convert(Study source) {
    final StudyMediumDTO studyDTO = new StudyMediumDTO();
    studyDTO.setId(source.getId());
    studyDTO.setTitle(source.getTitle());
    studyDTO.setDescription(source.getDescription());
    studyDTO.setCreated(source.getCreated());
    studyDTO.setStartDate(source.getStartDate());
    studyDTO.setEndDate(source.getEndDate());
    studyDTO.setStatus(conversionService.convert(source.getStatus(), StudyStatusDTO.class));
    final Map<ParticipantRole, List<UserStudyExtended>> studyParticipants = source.getParticipants().stream().collect(Collectors.groupingBy(link -> link.getRole() == ParticipantRole.LEAD_INVESTIGATOR ? LEAD_INVESTIGATOR : CONTRIBUTOR));
    final List<UserStudyExtended> studyLeads = studyParticipants.get(LEAD_INVESTIGATOR);
    if (!CollectionUtils.isEmpty(studyLeads)) {
        studyDTO.setStudyLeads(studyLeads.stream().filter(distinctByKey(p -> p.getUser().getId())).map(studyParticipant -> conversionService.convert(studyParticipant, ParticipantDTO.class)).collect(Collectors.toList()));
    }
    final List<UserStudyExtended> studyContributors = studyParticipants.get(CONTRIBUTOR);
    if (!CollectionUtils.isEmpty(studyContributors)) {
        studyDTO.setStudyParticipants(studyContributors.stream().filter(distinctByKey(p -> p.getUser().getId())).map(studyParticipant -> conversionService.convert(studyParticipant, ParticipantExtendedDTO.class)).collect(Collectors.toList()));
    }
    final List<StudyDataSourceLink> studyDataSources = source.getDataSources();
    studyDTO.setStudyDataSources(studyDataSources.stream().map(studyDataSource -> conversionService.convert(studyDataSource.getDataSource(), DataSourceDTO.class)).collect(Collectors.toList()));
    return studyDTO;
}

Example 2 with ParticipantRole

use of com.odysseusinc.arachne.portal.model.ParticipantRole in project ArachneCentralAPI by OHDSI.

the class ParticipantLinkToParticipantDTOConverter method convert.

@Override
public ParticipantDTO convert(ParticipantLink participantLink) {
    ParticipantDTO participantDTO = new ParticipantDTO();
    ParticipantRole role = participantLink.getRole();
    final IUser user = participantLink.getUser();
    participantDTO.setId(user.getUuid());
    participantDTO.setFullName(user.getFullName());
    participantDTO.setRole(new OptionDTO(role.name(), role.toString()));
    participantDTO.setStatus(participantLink.getStatus().toString());
    if (participantLink instanceof UserStudyExtended) {
        if (DECLINED == participantLink.getStatus() && !isEmpty(((UserStudyExtended) participantLink).getComment())) {
            participantDTO.setComment(((UserStudyExtended) participantLink).getComment());
        }
        if (role.equals(ParticipantRole.DATA_SET_OWNER)) {
            DataSource ownedDataSource = ((UserStudyExtended) participantLink).getDataSource();
            participantDTO = new DataOwnerParticipantDTO(participantDTO, ownedDataSource.getId());
        }
    }
    return participantDTO;
}

Example 3 with ParticipantRole

use of com.odysseusinc.arachne.portal.model.ParticipantRole in project ArachneCentralAPI by OHDSI.

the class BaseArachneSecureServiceImpl method getRolesByAnalysis.

@Override
public List<ParticipantRole> getRolesByAnalysis(ArachneUser user, Analysis analysis) {
    List<ParticipantRole> result = new LinkedList<>();
    if (analysis != null) {
        if (analysis.getStudy() != null) {
            result = getRolesByStudy(user, analysis.getStudy());
        } else {
            Analysis byId = analysisRepository.findOne(analysis.getId());
            result = byId != null ? getRolesByStudy(user, byId.getStudy()) : result;
        }
        if (analysis.getAuthor().getId().equals(user.getId())) {
            result.add(ParticipantRole.ANALYSIS_OWNER);
        }
    }
    return result;
}

Example 4 with ParticipantRole

use of com.odysseusinc.arachne.portal.model.ParticipantRole in project ArachneCentralAPI by OHDSI.

the class BaseArachneSecureServiceImpl method getRolesBySubmissionGroup.

@Override
public List<ParticipantRole> getRolesBySubmissionGroup(ArachneUser user, SubmissionGroup submissionGroup) {
    List<ParticipantRole> result = new LinkedList<>();
    Optional.ofNullable(submissionGroup).ifPresent(sg -> {
        Analysis analysis = submissionGroup.getAnalysis();
        if (analysis != null && analysis.getStudy() != null) {
            result.addAll(getRolesByStudy(user, analysis.getStudy()));
        }
    });
    return result;
}

Example 5 with ParticipantRole

use of com.odysseusinc.arachne.portal.model.ParticipantRole in project ArachneCentralAPI by OHDSI.

the class BaseArachneSecureServiceImpl method getRolesBySubmission.

@Override
public List<ParticipantRole> getRolesBySubmission(ArachneUser user, Submission submission) {
    List<ParticipantRole> result = new LinkedList<>();
    if (submission != null) {
        Analysis analysis = submission.getSubmissionGroup().getAnalysis();
        result = getRolesByAnalysis(user, analysis);
        final DataNode dataNode = submission.getDataSource().getDataNode();
        if (!DataNodeUtils.isDataNodeOwner(dataNode, user.getId())) {
            // There can be many DATA_SET_OWNER-s in a single study, owning different data sources
            // But in case of Submission, we are interested, whether current user is owner of the submission's DS
            result.removeIf(ParticipantRole.DATA_SET_OWNER::equals);
        }
    }
    return result;
}