Examples with ValidationRuntimeException com.odysseusinc.arachne.portal.exception.ValidationRuntimeException used on opensource projects

Example 1 with ValidationRuntimeException

use of com.odysseusinc.arachne.portal.exception.ValidationRuntimeException in project ArachneCentralAPI by OHDSI.

the class BaseAnalysisController method addCommonEntityToAnalysis.

@ApiOperation("Add common entity to analysis")
@RequestMapping(value = "/api/v1/analysis-management/analyses/{analysisId}/entities", method = POST)
public JsonResult addCommonEntityToAnalysis(@PathVariable("analysisId") Long analysisId, @RequestBody @Valid DataReferenceDTO entityReference, @RequestParam(value = "type", required = false, defaultValue = "COHORT") CommonAnalysisType analysisType, Principal principal) throws NotExistException, JMSException, IOException, PermissionDeniedException, URISyntaxException {
    if (!analysisModificationLock.add(analysisId)) {
        throw new ValidationRuntimeException("Analysis import rejected", Collections.singletonMap(entityReference.getEntityGuid(), Collections.singletonList("Another import into this analysis is in progress")));
    }
    try {
        LOGGER.debug("Started import into analysis {}", analysisId);
        final IUser user = getUser(principal);
        final DataNode dataNode = dataNodeService.getById(entityReference.getDataNodeId());
        final T analysis = analysisService.getById(analysisId);
        final DataReference dataReference = dataReferenceService.addOrUpdate(entityReference.getEntityGuid(), dataNode);
        final List<MultipartFile> entityFiles = getEntityFiles(entityReference, dataNode, analysisType);
        String description = doAddCommonEntityToAnalysis(analysis, dataReference, user, analysisType, entityFiles);
        return new JsonResult(NO_ERROR, description);
    } finally {
        analysisModificationLock.remove(analysisId);
        LOGGER.debug("Completed import into analysis {}", analysisId);
    }
}

Example 2 with ValidationRuntimeException

use of com.odysseusinc.arachne.portal.exception.ValidationRuntimeException in project ArachneCentralAPI by OHDSI.

the class AnalysisFilesSavingServiceImpl method saveFiles.

@Override
@PreAuthorize("hasPermission(#analysis, " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).UPLOAD_ANALYSIS_FILES)")
public List<AnalysisFile> saveFiles(List<UploadFileDTO> files, IUser user, A analysis) throws IOException {
    List<String> errorFileMessages = new ArrayList<>();
    List<AnalysisFile> savedFiles = new ArrayList<>();
    for (UploadFileDTO f : files) {
        try {
            if (StringUtils.isNotBlank(f.getLink())) {
                savedFiles.add(saveFileByLink(f.getLink(), user, analysis, f.getLabel(), f.getExecutable()));
            } else if (f.getFile() != null) {
                savedFiles.add(saveFile(f.getFile(), user, analysis, f.getLabel(), f.getExecutable(), null));
            } else {
                errorFileMessages.add(String.format("Invalid file: \"%s\"", f.getLabel()));
            }
        } catch (AlreadyExistException e) {
            errorFileMessages.add(e.getMessage());
        }
    }
    if (!errorFileMessages.isEmpty()) {
        throw new ValidationRuntimeException("Failed to save files", ImmutableMap.of("file", errorFileMessages));
    }
    return savedFiles;
}

Example 3 with ValidationRuntimeException

use of com.odysseusinc.arachne.portal.exception.ValidationRuntimeException in project ArachneCentralAPI by OHDSI.

the class AnalysisFilesSavingServiceImpl method saveFiles.

@PreAuthorize("hasPermission(#analysis, " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).UPLOAD_ANALYSIS_FILES)")
protected List<AnalysisFile> saveFiles(List<MultipartFile> multipartFiles, IUser user, A analysis, DataReference dataReference, BiPredicate<String, CommonAnalysisType> checkFileExecutabilityPredicate) {
    List<MultipartFile> filteredFiles = multipartFiles.stream().filter(file -> !(CommonAnalysisType.COHORT.equals(analysis.getType()) && file.getName().endsWith(OHDSI_JSON_EXT))).filter(file -> !file.getName().startsWith(ANALYSIS_INFO_FILE_DESCRIPTION)).collect(Collectors.toList());
    List<AnalysisFile> savedFiles = new ArrayList<>();
    List<String> errorFileMessages = new ArrayList<>();
    for (MultipartFile file : filteredFiles) {
        try {
            final boolean isExecutable = checkFileExecutabilityPredicate.test(file.getOriginalFilename(), analysis.getType());
            savedFiles.add(saveFile(file, user, analysis, file.getName(), isExecutable, dataReference));
        } catch (AlreadyExistException e) {
            errorFileMessages.add(e.getMessage());
        }
    }
    if (!errorFileMessages.isEmpty()) {
        throw new ValidationRuntimeException("Failed to save files", ImmutableMap.of(dataReference.getGuid(), errorFileMessages));
    }
    return savedFiles;
}