Examples with OHDSI_JSON_EXT com.odysseusinc.arachne.commons.utils.CommonFileUtils.OHDSI_JSON_EXT used on opensource projects

Example 1 with OHDSI_JSON_EXT

use of com.odysseusinc.arachne.commons.utils.CommonFileUtils.OHDSI_JSON_EXT in project ArachneCentralAPI by OHDSI.

the class AnalysisFilesSavingServiceImpl method saveFiles.

@PreAuthorize("hasPermission(#analysis, " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).UPLOAD_ANALYSIS_FILES)")
protected List<AnalysisFile> saveFiles(List<MultipartFile> multipartFiles, IUser user, A analysis, DataReference dataReference, BiPredicate<String, CommonAnalysisType> checkFileExecutabilityPredicate) {
    List<MultipartFile> filteredFiles = multipartFiles.stream().filter(file -> !(CommonAnalysisType.COHORT.equals(analysis.getType()) && file.getName().endsWith(OHDSI_JSON_EXT))).filter(file -> !file.getName().startsWith(ANALYSIS_INFO_FILE_DESCRIPTION)).collect(Collectors.toList());
    List<AnalysisFile> savedFiles = new ArrayList<>();
    List<String> errorFileMessages = new ArrayList<>();
    for (MultipartFile file : filteredFiles) {
        try {
            final boolean isExecutable = checkFileExecutabilityPredicate.test(file.getOriginalFilename(), analysis.getType());
            savedFiles.add(saveFile(file, user, analysis, file.getName(), isExecutable, dataReference));
        } catch (AlreadyExistException e) {
            errorFileMessages.add(e.getMessage());
        }
    }
    if (!errorFileMessages.isEmpty()) {
        throw new ValidationRuntimeException("Failed to save files", ImmutableMap.of(dataReference.getGuid(), errorFileMessages));
    }
    return savedFiles;
}