Examples with Resource de.ipk_gatersleben.bit.bi.bridge.brapicomp.dbentities.Resource used on opensource projects

Example 1 with Resource

use of de.ipk_gatersleben.bit.bi.bridge.brapicomp.dbentities.Resource in project IPK-BrAPI-Validator by plantbreeding.

the class AdminResource method generalTest.

/**
 * Run the default test on all public resources
 *
 * @return Empty response with status code
 */
@GET
@Path("/testallpublic")
public Response generalTest(@Context HttpHeaders headers, @QueryParam("version") @DefaultValue("") String version) {
    if (Config.get("advancedMode") == null) {
        return Response.status(Status.NOT_FOUND).build();
    }
    LOGGER.debug("New GET /admin/testallpublic call.");
    try {
        // Check auth header
        if (!auth(headers)) {
            String e = JsonMessageManager.jsonMessage(401, "unauthorized", 4002);
            return Response.status(Status.UNAUTHORIZED).entity(e).build();
        }
        if (!version.equals("v1.0") && !version.equals("v1.1")) {
            String jsonError = JsonMessageManager.jsonMessage(400, "Missing or invalid version parameter", 4202);
            return Response.status(Status.BAD_REQUEST).encoding(jsonError).build();
        }
        ObjectMapper mapper = new ObjectMapper();
        InputStream inJson = TestCollection.class.getResourceAsStream("/collections/CompleteBrapiTest." + version + ".json");
        TestCollection tc = mapper.readValue(inJson, TestCollection.class);
        List<Resource> publicResources = ResourceService.getAllPublicEndpoints();
        publicResources.forEach(resource -> {
            try {
                RunnerService.TestEndpointWithCallAndSaveReport(resource, tc);
            } catch (SQLException | JsonProcessingException e) {
                e.printStackTrace();
            }
        });
        System.out.println("Done");
        return Response.ok().build();
    } catch (SQLException | IOException e) {
        e.printStackTrace();
        String e1 = JsonMessageManager.jsonMessage(500, "internal server error", 5003);
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity(e1).build();
    }
}

Example 2 with Resource

use of de.ipk_gatersleben.bit.bi.bridge.brapicomp.dbentities.Resource in project IPK-BrAPI-Validator by plantbreeding.

the class AdminResource method updateProviders.

/**
 * Update database information using public json document.
 *
 * @return Empty response with status code
 */
@POST
@Path("/updateproviders")
public Response updateProviders(@Context HttpHeaders headers) {
    if (Config.get("advancedMode") == null) {
        return Response.status(Status.NOT_FOUND).build();
    }
    LOGGER.debug("New GET /admin/testallpublic call.");
    int resourcesUpdated = 0;
    try {
        // Check auth header
        if (!auth(headers)) {
            String e = JsonMessageManager.jsonMessage(401, "unauthorized", 4002);
            return Response.status(Status.UNAUTHORIZED).entity(e).build();
        }
        ObjectMapper mapper = new ObjectMapper();
        // Required because some resource properties are arrays and some objects.
        mapper.configure(DeserializationFeature.ACCEPT_SINGLE_VALUE_AS_ARRAY, true);
        // Download Json
        URL url = new URL(Config.get("resourceJsonUrl"));
        URLConnection connection;
        if (!Config.get("http.proxyHost").equals("")) {
            Proxy proxy = new Proxy(Proxy.Type.HTTP, new InetSocketAddress(Config.get("http.proxyHost"), Integer.parseInt(Config.get("http.proxyPort"))));
            connection = url.openConnection(proxy);
        } else {
            connection = url.openConnection();
        }
        connection.connect();
        InputStream is = connection.getInputStream();
        JsonNode node = mapper.readTree(is).at("/brapi-providers/category");
        Dao<Provider, UUID> providerDao = DataSourceManager.getDao(Provider.class);
        Dao<Resource, UUID> resourceDao = DataSourceManager.getDao(Resource.class);
        // Iterate through providers.
        for (int i = 0; i < node.size(); i++) {
            Provider providerJson = mapper.treeToValue(node.get(i), Provider.class);
            // Check if provider existed (by name)
            Provider providerDb = providerDao.queryBuilder().where().eq(Provider.NAME_FIELD_NAME, providerJson.getName()).queryForFirst();
            if (providerDb == null) {
                // Not found in DB, generate
                providerDao.create(providerJson);
                providerDao.refresh(providerJson);
                Iterator<Resource> it = providerJson.getResources().iterator();
                while (it.hasNext()) {
                    Resource res = it.next();
                    res.setProvider(providerJson);
                    res.setPublic(true);
                    resourceDao.create(res);
                    resourcesUpdated++;
                }
            } else {
                // Found in DB, update.
                providerDb.setDescription(providerJson.getDescription());
                providerDb.setLogo(providerJson.getLogo());
                Iterator<Resource> it = providerJson.getResources().iterator();
                while (it.hasNext()) {
                    Resource res = it.next();
                    // Check resources in DB
                    Resource resDb = resourceDao.queryBuilder().where().eq(Resource.URL_FIELD_NAME, res.getUrl()).and().eq(Resource.PROVIDER_FIELD_NAME, providerDb.getId()).queryForFirst();
                    if (resDb == null) {
                        // Not found, create
                        res.setProvider(providerDb);
                        res.setPublic(true);
                        resourceDao.create(res);
                        resourcesUpdated++;
                    } else {
                        // Found, generate
                        resDb.setCertificate(res.getCertificate());
                        resDb.setName(res.getName());
                        resDb.setLogo(res.getLogo());
                        resDb.setPublic(true);
                        resourceDao.update(resDb);
                        resourcesUpdated++;
                    }
                }
                providerDao.update(providerDb);
            }
        }
        String response = JsonMessageManager.jsonMessage(200, "" + resourcesUpdated + " resources updated.", 2000);
        return Response.ok().entity(response).build();
    } catch (IOException | SQLException e) {
        e.printStackTrace();
        String e1 = JsonMessageManager.jsonMessage(500, "internal server error", 5003);
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity(e1).build();
    }
}

Example 3 with Resource

use of de.ipk_gatersleben.bit.bi.bridge.brapicomp.dbentities.Resource in project IPK-BrAPI-Validator by plantbreeding.

the class ContinuousIntegrationResource method createEndpoint.

/**
 * Register new resource
 *
 * @param endp Json containing the resource's url.
 * @return Json message.
 */
@POST
@Path("/resources")
@Consumes(MediaType.APPLICATION_JSON)
@Produces(MediaType.APPLICATION_JSON)
public Response createEndpoint(@Context HttpHeaders headers, Resource res) {
    if (Config.get("advancedMode") == null) {
        return Response.status(Status.NOT_FOUND).build();
    }
    LOGGER.debug("New POST /ci/resources call.");
    Dao<Resource, UUID> endpointDao = DataSourceManager.getDao(Resource.class);
    try {
        // Check if the record exists in the database already.
        Resource e = ResourceService.getEndpointWithEmailAndUrlAndFreq(res.getEmail(), res.getUrl(), res.getFrequency());
        if (res.getEmail() == null) {
            String e2 = JsonMessageManager.jsonMessage(400, "Invalid email", 4100);
            return Response.status(Status.BAD_REQUEST).entity(e2).build();
        } else if (e != null && e.isConfirmed()) {
            String e2 = JsonMessageManager.jsonMessage(400, "Url already in use", 4101);
            return Response.status(Status.BAD_REQUEST).entity(e2).build();
        } else if (e != null && !e.isConfirmed()) {
            EmailManager em = new EmailManager(res);
            em.sendConfirmation();
            String e2 = JsonMessageManager.jsonMessage(200, "We'll resend you a confirmation email.", 2100);
            return Response.status(Status.ACCEPTED).entity(e2).build();
        } else {
            res.setPublic(false);
            endpointDao.create(res);
            EmailManager em = new EmailManager(res);
            em.sendConfirmation();
            return Response.status(Status.ACCEPTED).entity(JsonMessageManager.jsonMessage(200, "We'll send you a confirmation email.", 2101)).build();
        }
    } catch (SQLException e) {
        e.printStackTrace();
        String e1 = JsonMessageManager.jsonMessage(500, "Internal server error", 5100);
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity(e1).build();
    }
}

Example 4 with Resource

use of de.ipk_gatersleben.bit.bi.bridge.brapicomp.dbentities.Resource in project IPK-BrAPI-Validator by plantbreeding.

the class SingleTestResource method callTest.

/**
 * Run a call test
 *
 * @param url  Url of the BrAPI server. Example: https://test.brapi.org/brapi/v1/
 * @return Response with json report
 */
@GET
@Path("/call")
@Produces(MediaType.APPLICATION_JSON)
public Response callTest(@QueryParam("url") String url, @QueryParam("brapiversion") @DefaultValue("") String version) {
    LOGGER.debug("New GET /call call.");
    try {
        if (url.equals("")) {
            String jsonError = JsonMessageManager.jsonMessage(400, "Missing or invalid url parameter", 4202);
            return Response.status(Status.BAD_REQUEST).encoding(jsonError).build();
        }
        if (!version.equals("v1.0") && !version.equals("v1.1")) {
            String jsonError = JsonMessageManager.jsonMessage(400, "Missing or invalid version parameter", 4202);
            return Response.status(Status.BAD_REQUEST).encoding(jsonError).build();
        }
        String collectionResource;
        ObjectMapper mapper = new ObjectMapper();
        collectionResource = "/collections/CompleteBrapiTest." + version + ".json";
        InputStream inJson = TestCollection.class.getResourceAsStream(collectionResource);
        TestCollection tc = mapper.readValue(inJson, TestCollection.class);
        Resource res = new Resource(url);
        TestSuiteReport testSuiteReport = RunnerService.testEndpointWithCall(res, tc);
        TestReport report = new TestReport(res, mapper.writeValueAsString(testSuiteReport));
        return Response.ok().entity(report).build();
    } catch (IllegalArgumentException e) {
        e.printStackTrace();
        String e1 = JsonMessageManager.jsonMessage(400, "invalid URL: port must be 80", 5201);
        return Response.status(Status.BAD_REQUEST).entity(e1).build();
    } catch (IOException e) {
        // Thrown by .getResourceAsStream(""). Most probably because of missing file or wrong config structure.
        e.printStackTrace();
        String e1 = JsonMessageManager.jsonMessage(500, "internal server error", 5201);
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity(e1).build();
    }
}