Examples with SampleAssociationType de.symeda.sormas.api.sample.SampleAssociationType used on opensource projects

Example 1 with SampleAssociationType

use of de.symeda.sormas.api.sample.SampleAssociationType in project SORMAS-Project by hzi-braunschweig.

the class SampleService method createUserFilter.

@SuppressWarnings("rawtypes")
public Predicate createUserFilter(CriteriaQuery cq, CriteriaBuilder cb, SampleJoins joins, SampleCriteria criteria) {
    Predicate filter = createUserFilterWithoutAssociations(cb, joins);
    User currentUser = getCurrentUser();
    final JurisdictionLevel jurisdictionLevel = currentUser.getCalculatedJurisdictionLevel();
    if (jurisdictionLevel == JurisdictionLevel.LABORATORY || jurisdictionLevel == JurisdictionLevel.EXTERNAL_LABORATORY) {
        return filter;
    }
    if (criteria != null && criteria.getSampleAssociationType() != null && criteria.getSampleAssociationType() != SampleAssociationType.ALL) {
        final SampleAssociationType sampleAssociationType = criteria.getSampleAssociationType();
        if (sampleAssociationType == SampleAssociationType.CASE) {
            filter = CriteriaBuilderHelper.or(cb, filter, caseService.createUserFilter(cb, cq, joins.getCaze(), null));
        } else if (sampleAssociationType == SampleAssociationType.CONTACT) {
            filter = CriteriaBuilderHelper.or(cb, filter, contactService.createUserFilterForJoin(cb, cq, joins.getContact()));
        } else if (sampleAssociationType == SampleAssociationType.EVENT_PARTICIPANT) {
            filter = CriteriaBuilderHelper.or(cb, filter, eventParticipantService.createUserFilterForJoin(cb, cq, joins.getEventParticipant()));
        }
    } else if (currentUser.getLimitedDisease() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, CriteriaBuilderHelper.or(cb, caseService.createUserFilter(cb, cq, joins.getCaze(), null), contactService.createUserFilterForJoin(cb, cq, joins.getContact()), eventParticipantService.createUserFilterForJoin(cb, cq, joins.getEventParticipant())));
    } else {
        filter = CriteriaBuilderHelper.or(cb, filter, caseService.createUserFilter(cb, cq, joins.getCaze(), null), contactService.createUserFilterForJoin(cb, cq, joins.getContact()), eventParticipantService.createUserFilterForJoin(cb, cq, joins.getEventParticipant()));
    }
    return filter;
}

Example 2 with SampleAssociationType

use of de.symeda.sormas.api.sample.SampleAssociationType in project SORMAS-Project by hzi-braunschweig.

the class SampleService method buildSampleListCriteriaFilter.

private Predicate buildSampleListCriteriaFilter(SampleCriteria criteria, CriteriaBuilder cb, SampleJoins joins) {
    Predicate filter = null;
    final SampleAssociationType sampleAssociationType = criteria.getSampleAssociationType();
    if (sampleAssociationType == SampleAssociationType.CASE) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getCaze()));
    } else if (sampleAssociationType == SampleAssociationType.CONTACT) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getContact()));
    } else if (sampleAssociationType == SampleAssociationType.EVENT_PARTICIPANT) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getEventParticipant()));
    }
    if (criteria.getCaze() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getCaze().get(Case.UUID), criteria.getCaze().getUuid()));
    }
    if (criteria.getContact() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getContact().get(Contact.UUID), criteria.getContact().getUuid()));
    }
    if (criteria.getEventParticipant() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getEventParticipant().get(EventParticipant.UUID), criteria.getEventParticipant().getUuid()));
    }
    return filter;
}

Example 3 with SampleAssociationType

use of de.symeda.sormas.api.sample.SampleAssociationType in project SORMAS-Project by hzi-braunschweig.

the class SampleGridComponent method createShipmentFilterBar.

public HorizontalLayout createShipmentFilterBar() {
    HorizontalLayout shipmentFilterLayout = new HorizontalLayout();
    shipmentFilterLayout.setMargin(false);
    shipmentFilterLayout.setSpacing(true);
    shipmentFilterLayout.setWidth(100, Unit.PERCENTAGE);
    shipmentFilterLayout.addStyleName(CssStyles.VSPACE_3);
    statusButtons = new HashMap<>();
    HorizontalLayout buttonFilterLayout = new HorizontalLayout();
    buttonFilterLayout.setSpacing(true);
    {
        Button statusAll = ButtonHelper.createButton(Captions.all, e -> processStatusChange(null), ValoTheme.BUTTON_BORDERLESS, CssStyles.BUTTON_FILTER);
        statusAll.setCaptionAsHtml(true);
        buttonFilterLayout.addComponent(statusAll);
        statusButtons.put(statusAll, I18nProperties.getCaption(Captions.all));
        activeStatusButton = statusAll;
        createAndAddStatusButton(Captions.sampleNotShipped, NOT_SHIPPED, buttonFilterLayout);
        createAndAddStatusButton(Captions.sampleShipped, SHIPPED, buttonFilterLayout);
        createAndAddStatusButton(Captions.sampleReceived, RECEIVED, buttonFilterLayout);
        createAndAddStatusButton(Captions.sampleReferred, REFERRED, buttonFilterLayout);
    }
    shipmentFilterLayout.addComponent(buttonFilterLayout);
    HorizontalLayout actionButtonsLayout = new HorizontalLayout();
    actionButtonsLayout.setSpacing(true);
    {
        // Show active/archived/all dropdown
        if (UserProvider.getCurrent().hasUserRight(UserRight.SAMPLE_VIEW)) {
            relevanceStatusFilter = ComboBoxHelper.createComboBoxV7();
            relevanceStatusFilter.setId("relevanceStatusFilter");
            relevanceStatusFilter.setWidth(140, Unit.PERCENTAGE);
            relevanceStatusFilter.setNullSelectionAllowed(false);
            relevanceStatusFilter.addItems((Object[]) EntityRelevanceStatus.values());
            relevanceStatusFilter.setItemCaption(EntityRelevanceStatus.ACTIVE, I18nProperties.getCaption(Captions.sampleActiveSamples));
            relevanceStatusFilter.setItemCaption(EntityRelevanceStatus.ARCHIVED, I18nProperties.getCaption(Captions.sampleArchivedSamples));
            relevanceStatusFilter.setItemCaption(EntityRelevanceStatus.ALL, I18nProperties.getCaption(Captions.sampleAllSamples));
            relevanceStatusFilter.addValueChangeListener(e -> {
                criteria.relevanceStatus((EntityRelevanceStatus) e.getProperty().getValue());
                samplesView.navigateTo(criteria);
            });
            actionButtonsLayout.addComponent(relevanceStatusFilter);
        }
        // Bulk operation dropdown
        if (UserProvider.getCurrent().hasUserRight(UserRight.PERFORM_BULK_OPERATIONS_CASE_SAMPLES)) {
            shipmentFilterLayout.setWidth(100, Unit.PERCENTAGE);
            bulkOperationsDropdown = MenuBarHelper.createDropDown(Captions.bulkActions, new MenuBarHelper.MenuBarItem(I18nProperties.getCaption(Captions.bulkDelete), VaadinIcons.TRASH, selectedItem -> {
                ControllerProvider.getSampleController().deleteAllSelectedItems(grid.asMultiSelect().getSelectedItems(), new Runnable() {

                    public void run() {
                        samplesView.navigateTo(criteria);
                    }
                });
            }));
            bulkOperationsDropdown.setVisible(samplesView.getViewConfiguration().isInEagerMode());
            actionButtonsLayout.addComponent(bulkOperationsDropdown);
        }
        sampleTypeFilter = ComboBoxHelper.createComboBoxV7();
        sampleTypeFilter.setWidth(140, Unit.PERCENTAGE);
        sampleTypeFilter.setId("sampleTypeFilter");
        sampleTypeFilter.setNullSelectionAllowed(false);
        sampleTypeFilter.addItems((Object[]) SampleAssociationType.values());
        sampleTypeFilter.setItemCaption(SampleAssociationType.ALL, I18nProperties.getEnumCaption(SampleAssociationType.ALL));
        sampleTypeFilter.setItemCaption(SampleAssociationType.CASE, I18nProperties.getEnumCaption(SampleAssociationType.CASE));
        sampleTypeFilter.setItemCaption(SampleAssociationType.CONTACT, I18nProperties.getEnumCaption(SampleAssociationType.CONTACT));
        sampleTypeFilter.setItemCaption(SampleAssociationType.EVENT_PARTICIPANT, I18nProperties.getEnumCaption(SampleAssociationType.EVENT_PARTICIPANT));
        sampleTypeFilter.addValueChangeListener(e -> {
            criteria.sampleAssociationType(((SampleAssociationType) e.getProperty().getValue()));
            samplesView.navigateTo(criteria);
        });
        actionButtonsLayout.addComponent(sampleTypeFilter);
    }
    shipmentFilterLayout.addComponent(actionButtonsLayout);
    shipmentFilterLayout.setComponentAlignment(actionButtonsLayout, Alignment.TOP_RIGHT);
    shipmentFilterLayout.setExpandRatio(actionButtonsLayout, 1);
    return shipmentFilterLayout;
}

Example 4 with SampleAssociationType

use of de.symeda.sormas.api.sample.SampleAssociationType in project SORMAS-Project by hzi-braunschweig.

the class SampleService method buildCriteriaFilter.

public Predicate buildCriteriaFilter(SampleCriteria criteria, SampleQueryContext sampleQueryContext) {
    SampleJoins joins = sampleQueryContext.getJoins();
    CriteriaBuilder cb = sampleQueryContext.getCriteriaBuilder();
    final From<?, ?> sample = joins.getRoot();
    Predicate filter = null;
    final SampleAssociationType sampleAssociationType = criteria.getSampleAssociationType();
    if (sampleAssociationType == SampleAssociationType.CASE) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getCaze()));
    } else if (sampleAssociationType == SampleAssociationType.CONTACT) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getContact()));
    } else if (sampleAssociationType == SampleAssociationType.EVENT_PARTICIPANT) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(joins.getEventParticipant()));
    }
    if (criteria.getRegion() != null) {
        final String regionUuid = criteria.getRegion().getUuid();
        filter = CriteriaBuilderHelper.and(cb, filter, CriteriaBuilderHelper.or(cb, cb.equal(joins.getCaseRegion().get(Region.UUID), regionUuid), cb.equal(joins.getCaseResponsibleRegion().get(Region.UUID), regionUuid), cb.equal(joins.getContactRegion().get(Region.UUID), regionUuid), cb.equal(joins.getContactCaseRegion().get(Region.UUID), regionUuid), cb.equal(joins.getContactCaseResponsibleRegion().get(Region.UUID), regionUuid), cb.equal(joins.getEventRegion().get(Region.UUID), regionUuid), cb.equal(joins.getEventParticipantJoins().getEventParticipantResponsibleRegion().get(Region.UUID), regionUuid)));
    }
    if (criteria.getDistrict() != null) {
        final String districtUuid = criteria.getDistrict().getUuid();
        filter = CriteriaBuilderHelper.and(cb, filter, CriteriaBuilderHelper.or(cb, cb.equal(joins.getCaseDistrict().get(District.UUID), districtUuid), cb.equal(joins.getCaseResponsibleDistrict().get(District.UUID), districtUuid), cb.equal(joins.getContactDistrict().get(District.UUID), districtUuid), cb.equal(joins.getContactCaseDistrict().get(District.UUID), districtUuid), cb.equal(joins.getContactCaseResponsibleDistrict().get(District.UUID), districtUuid), cb.equal(joins.getEventDistrict().get(District.UUID), districtUuid), cb.equal(joins.getEventParticipantJoins().getEventParticipantResponsibleDistrict().get(District.UUID), districtUuid)));
    }
    if (criteria.getLaboratory() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getLab().get(AbstractDomainObject.UUID), criteria.getLaboratory().getUuid()));
    }
    if (criteria.getShipped() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(sample.get(Sample.SHIPPED), criteria.getShipped()));
    }
    if (criteria.getReceived() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(sample.get(Sample.RECEIVED), criteria.getReceived()));
    }
    if (criteria.getReferred() != null) {
        if (criteria.getReferred().equals(Boolean.TRUE)) {
            filter = CriteriaBuilderHelper.and(cb, filter, cb.isNotNull(sample.get(Sample.REFERRED_TO)));
        } else {
            filter = CriteriaBuilderHelper.and(cb, filter, cb.isNull(sample.get(Sample.REFERRED_TO)));
        }
    }
    if (criteria.getPathogenTestResult() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(sample.get(Sample.PATHOGEN_TEST_RESULT), criteria.getPathogenTestResult()));
    }
    if (criteria.getCaseClassification() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getCaze().get(Case.CASE_CLASSIFICATION), criteria.getCaseClassification()));
    }
    if (criteria.getDisease() != null) {
        Expression<Object> diseaseExpression = cb.selectCase().when(cb.isNotNull(joins.getCaze()), joins.getCaze().get(Case.DISEASE)).otherwise(cb.selectCase().when(cb.isNotNull(joins.getContact()), joins.getContact().get(Contact.DISEASE)).otherwise(joins.getEvent().get(Event.DISEASE)));
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(diseaseExpression, criteria.getDisease()));
    }
    if (criteria.getCaze() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getCaze().get(Case.UUID), criteria.getCaze().getUuid()));
    }
    if (criteria.getContact() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getContact().get(Contact.UUID), criteria.getContact().getUuid()));
    }
    if (criteria.getEventParticipant() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getEventParticipant().get(EventParticipant.UUID), criteria.getEventParticipant().getUuid()));
    }
    if (criteria.getSampleReportDateFrom() != null && criteria.getSampleReportDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.between(sample.get(Sample.SAMPLE_DATE_TIME), criteria.getSampleReportDateFrom(), criteria.getSampleReportDateTo()));
    } else if (criteria.getSampleReportDateFrom() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.greaterThanOrEqualTo(sample.get(Sample.SAMPLE_DATE_TIME), criteria.getSampleReportDateFrom()));
    } else if (criteria.getSampleReportDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.lessThanOrEqualTo(sample.get(Sample.SAMPLE_DATE_TIME), criteria.getSampleReportDateTo()));
    }
    if (criteria.getSpecimenCondition() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(sample.get(Sample.SPECIMEN_CONDITION), criteria.getSpecimenCondition()));
    }
    if (criteria.getRelevanceStatus() != null) {
        if (criteria.getRelevanceStatus() == EntityRelevanceStatus.ACTIVE) {
            filter = CriteriaBuilderHelper.and(cb, filter, cb.or(cb.equal(joins.getCaze().get(Case.ARCHIVED), false), cb.isNull(joins.getCaze().get(Case.ARCHIVED))));
        } else if (criteria.getRelevanceStatus() == EntityRelevanceStatus.ARCHIVED) {
            filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(joins.getCaze().get(Case.ARCHIVED), true));
        }
    }
    if (criteria.getDeleted() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(sample.get(Sample.DELETED), criteria.getDeleted()));
    }
    if (criteria.getCaseCodeIdLike() != null) {
        String[] textFilters = criteria.getCaseCodeIdLike().split("\\s+");
        for (String textFilter : textFilters) {
            if (DataHelper.isNullOrEmpty(textFilter)) {
                continue;
            }
            Predicate likeFilters = cb.or(CriteriaBuilderHelper.ilike(cb, joins.getCaze().get(Case.UUID), textFilter), CriteriaBuilderHelper.unaccentedIlike(cb, joins.getCasePerson().get(Person.FIRST_NAME), textFilter), CriteriaBuilderHelper.unaccentedIlike(cb, joins.getCasePerson().get(Person.LAST_NAME), textFilter), CriteriaBuilderHelper.ilike(cb, joins.getCaze().get(Case.EPID_NUMBER), textFilter), CriteriaBuilderHelper.ilike(cb, sample.get(Sample.UUID), textFilter), CriteriaBuilderHelper.ilike(cb, sample.get(Sample.LAB_SAMPLE_ID), textFilter), CriteriaBuilderHelper.ilike(cb, sample.get(Sample.FIELD_SAMPLE_ID), textFilter), CriteriaBuilderHelper.unaccentedIlike(cb, joins.getLab().get(Facility.NAME), textFilter));
            filter = CriteriaBuilderHelper.and(cb, filter, likeFilters);
        }
    }
    if (criteria.getCaseUuids() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, sample.get(Sample.ASSOCIATED_CASE).get(Case.UUID).in(criteria.getCaseUuids()));
    }
    if (criteria.getContactUuids() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, sample.get(Sample.ASSOCIATED_CONTACT).get(Contact.UUID).in(criteria.getContactUuids()));
    }
    if (criteria.getEventParticipantUuids() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, sample.get(Sample.ASSOCIATED_EVENT_PARTICIPANT).get(EventParticipant.UUID).in(criteria.getEventParticipantUuids()));
    }
    return filter;
}

Example 5 with SampleAssociationType

use of de.symeda.sormas.api.sample.SampleAssociationType in project SORMAS-Project by hzi-braunschweig.

the class SampleService method createUserFilter.

@SuppressWarnings("rawtypes")
public Predicate createUserFilter(SampleQueryContext sampleQueryContext, SampleCriteria criteria) {
    final CriteriaQuery cq = sampleQueryContext.getQuery();
    final CriteriaBuilder cb = sampleQueryContext.getCriteriaBuilder();
    final SampleJoins joins = sampleQueryContext.getJoins();
    User currentUser = getCurrentUser();
    if (currentUser == null) {
        return null;
    }
    Predicate filter = createUserFilterWithoutAssociations(cb, joins);
    final JurisdictionLevel jurisdictionLevel = currentUser.getJurisdictionLevel();
    if (jurisdictionLevel == JurisdictionLevel.LABORATORY || jurisdictionLevel == JurisdictionLevel.EXTERNAL_LABORATORY) {
        return filter;
    }
    if (criteria != null && criteria.getSampleAssociationType() != null && criteria.getSampleAssociationType() != SampleAssociationType.ALL) {
        final SampleAssociationType sampleAssociationType = criteria.getSampleAssociationType();
        if (sampleAssociationType == SampleAssociationType.CASE) {
            filter = CriteriaBuilderHelper.or(cb, filter, caseService.createUserFilter(new CaseQueryContext(cb, cq, joins.getCaseJoins()), null));
        } else if (sampleAssociationType == SampleAssociationType.CONTACT) {
            filter = CriteriaBuilderHelper.or(cb, filter, contactService.createUserFilter(new ContactQueryContext(cb, cq, joins.getContactJoins()), null));
        } else if (sampleAssociationType == SampleAssociationType.EVENT_PARTICIPANT) {
            filter = CriteriaBuilderHelper.or(cb, filter, eventParticipantService.createUserFilter(new EventParticipantQueryContext(cb, cq, joins.getEventParticipantJoins())));
        }
    } else if (currentUser.getLimitedDisease() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, CriteriaBuilderHelper.or(cb, caseService.createUserFilter(new CaseQueryContext(cb, cq, joins.getCaseJoins()), null), contactService.createUserFilter(new ContactQueryContext(cb, cq, joins.getContactJoins()), null), eventParticipantService.createUserFilter(new EventParticipantQueryContext(cb, cq, joins.getEventParticipantJoins()))));
    } else {
        filter = CriteriaBuilderHelper.or(cb, filter, caseService.createUserFilter(new CaseQueryContext(cb, cq, joins.getCaseJoins()), null), contactService.createUserFilter(new ContactQueryContext(cb, cq, joins.getContactJoins()), null), eventParticipantService.createUserFilter(new EventParticipantQueryContext(cb, cq, joins.getEventParticipantJoins())));
    }
    return filter;
}