Examples with Sample de.symeda.sormas.app.backend.sample.Sample used on opensource projects

Example 1 with Sample

use of de.symeda.sormas.app.backend.sample.Sample in project SORMAS-Project by hzi-braunschweig.

the class AbstractAdoDaoTest method testQueryForNew.

@Test
public void testQueryForNew() throws DaoException {
    CaseDao caseDao = DatabaseHelper.getCaseDao();
    // Case with change date 0 should be included
    Case caseChangeDate0 = TestEntityCreator.createCase();
    List<Case> newCases = caseDao.queryForNew();
    assertEquals(1, newCases.size());
    // Case with newer change date should not be included
    Case caseNewChangeDate = TestEntityCreator.createCase();
    caseNewChangeDate.setChangeDate(new Date());
    caseDao.saveAndSnapshot(caseNewChangeDate);
    newCases = caseDao.queryForNew();
    assertEquals(1, newCases.size());
    // Additional tests for other entities
    Contact contact = TestEntityCreator.createContact(caseChangeDate0);
    Visit visit = TestEntityCreator.createVisit(contact);
    Sample sample = TestEntityCreator.createSample(caseChangeDate0);
    Event event = TestEntityCreator.createEvent();
    EventParticipant eventParticipant = TestEntityCreator.createEventParticipant(event);
    assertEquals(1, DatabaseHelper.getContactDao().queryForNew().size());
    assertEquals(1, DatabaseHelper.getVisitDao().queryForNew().size());
    assertEquals(1, DatabaseHelper.getSampleDao().queryForNew().size());
    assertEquals(1, DatabaseHelper.getEventDao().queryForNew().size());
    assertEquals(1, DatabaseHelper.getEventParticipantDao().queryForNew().size());
}

Example 2 with Sample

use of de.symeda.sormas.app.backend.sample.Sample in project SORMAS-Project by hzi-braunschweig.

the class TestEntityCreator method createSample.

public static Sample createSample(Case caze) {
    if (caze == null) {
        caze = createCase();
    }
    Date sampleDateTime = DateHelper.subtractDays(new Date(), 1);
    Facility lab = DatabaseHelper.getFacilityDao().queryForAll().get(0);
    SampleMaterial material = SampleMaterial.BLOOD;
    Sample sample = DatabaseHelper.getSampleDao().build(caze);
    sample.setSampleDateTime(sampleDateTime);
    sample.setLab(lab);
    sample.setSampleMaterial(material);
    try {
        DatabaseHelper.getSampleDao().saveAndSnapshot(sample);
        DatabaseHelper.getSampleDao().accept(sample);
    } catch (DaoException e) {
        throw new RuntimeException(e);
    }
    return DatabaseHelper.getSampleDao().queryForIdWithEmbedded(sample.getId());
}

Example 3 with Sample

use of de.symeda.sormas.app.backend.sample.Sample in project SORMAS-Project by hzi-braunschweig.

the class SampleBackendTest method shouldMergeSamplesAsExpected.

@Test
public void shouldMergeSamplesAsExpected() throws DaoException {
    Sample sample = TestEntityCreator.createSample(null);
    PathogenTest pathogenTest = TestEntityCreator.createSampleTest(sample);
    sample.setComment("AppSampleComment");
    pathogenTest.setTestResult(PathogenTestResultType.NEGATIVE);
    DatabaseHelper.getSampleDao().saveAndSnapshot(sample);
    DatabaseHelper.getSampleDao().accept(sample);
    DatabaseHelper.getSampleTestDao().saveAndSnapshot(pathogenTest);
    DatabaseHelper.getSampleTestDao().accept(pathogenTest);
    Sample mergeSample = (Sample) sample.clone();
    mergeSample.setAssociatedCase((Case) sample.getAssociatedCase().clone());
    mergeSample.setId(null);
    mergeSample.setComment("ServerSampleComment");
    PathogenTest mergePathogenTest = (PathogenTest) pathogenTest.clone();
    mergePathogenTest.setId(null);
    mergePathogenTest.setTestResult(PathogenTestResultType.POSITIVE);
    DatabaseHelper.getSampleDao().mergeOrCreate(mergeSample);
    DatabaseHelper.getSampleTestDao().mergeOrCreate(mergePathogenTest);
    Sample updatedSample = DatabaseHelper.getSampleDao().queryUuid(sample.getUuid());
    assertThat(updatedSample.getComment(), is("ServerSampleComment"));
    PathogenTest updatedPathogenTest = DatabaseHelper.getSampleTestDao().queryUuid(pathogenTest.getUuid());
    assertThat(updatedPathogenTest.getTestResult(), is(PathogenTestResultType.POSITIVE));
}

Example 4 with Sample

use of de.symeda.sormas.app.backend.sample.Sample in project SORMAS-Project by hzi-braunschweig.

the class SampleBackendTest method shouldCreateSampleTest.

@Test
public void shouldCreateSampleTest() {
    assertThat(DatabaseHelper.getSampleTestDao().queryForAll().size(), is(0));
    Sample sample = TestEntityCreator.createSample(null);
    TestEntityCreator.createSampleTest(sample);
    assertThat(DatabaseHelper.getSampleTestDao().queryForAll().size(), is(1));
}

Example 5 with Sample

use of de.symeda.sormas.app.backend.sample.Sample in project SORMAS-Project by hzi-braunschweig.

the class CaseBackendTest method shouldDeleteWithDependingEntities.

@Test
public void shouldDeleteWithDependingEntities() throws DaoException, SQLException {
    // Assure that there are no cases or depending entities in the app to start with
    assertThat(DatabaseHelper.getCaseDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getContactDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getVisitDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getSampleDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getSampleTestDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getTaskDao().queryForAll().size(), is(0));
    Case caze = TestEntityCreator.createCase();
    Contact contact = TestEntityCreator.createContact(caze);
    TestEntityCreator.createVisit(contact);
    Sample sample = TestEntityCreator.createSample(caze);
    TestEntityCreator.createSampleTest(sample);
    TestEntityCreator.createCaseTask(caze, TaskStatus.PENDING, caze.getReportingUser());
    // Assure that the case and depending entities have been successfully created
    assertThat(DatabaseHelper.getCaseDao().queryForAll().size(), is(1));
    assertThat(DatabaseHelper.getContactDao().queryForAll().size(), is(1));
    assertThat(DatabaseHelper.getVisitDao().queryForAll().size(), is(1));
    assertThat(DatabaseHelper.getSampleDao().queryForAll().size(), is(1));
    assertThat(DatabaseHelper.getSampleTestDao().queryForAll().size(), is(1));
    assertThat(DatabaseHelper.getTaskDao().queryForAll().size(), is(1));
    DatabaseHelper.getCaseDao().deleteCaseAndAllDependingEntities(caze.getUuid());
    // Assure that there are no cases or depending entities in the app after the deletion
    assertThat(DatabaseHelper.getCaseDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getContactDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getVisitDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getSampleDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getSampleTestDao().queryForAll().size(), is(0));
    assertThat(DatabaseHelper.getTaskDao().queryForAll().size(), is(0));
}