Examples with RDCF de.symeda.sormas.backend.TestDataCreator.RDCF used on opensource projects

Example 56 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testCreateCaseWithoutUuid.

@Test
public void testCreateCaseWithoutUuid() {
    RDCF rdcf = creator.createRDCF();
    CaseDataDto caze = new CaseDataDto();
    caze.setReportDate(new Date());
    caze.setReportingUser(creator.createUser(rdcf, UserRole.SURVEILLANCE_OFFICER).toReference());
    caze.setCaseClassification(CaseClassification.PROBABLE);
    caze.setInvestigationStatus(InvestigationStatus.PENDING);
    caze.setDisease(Disease.CORONAVIRUS);
    caze.setPerson(creator.createPerson().toReference());
    caze.setResponsibleRegion(rdcf.region);
    caze.setResponsibleDistrict(rdcf.district);
    caze.setFacilityType(FacilityType.HOSPITAL);
    caze.setHealthFacility(rdcf.facility);
    caze.setTherapy(new TherapyDto());
    caze.setSymptoms(new SymptomsDto());
    EpiDataDto epiData = new EpiDataDto();
    ExposureDto exposure = new ExposureDto();
    exposure.setExposureType(ExposureType.WORK);
    epiData.setExposures(Collections.singletonList(exposure));
    caze.setEpiData(epiData);
    CaseDataDto savedCaze = getCaseFacade().save(caze);
    MatcherAssert.assertThat(savedCaze.getUuid(), not(isEmptyOrNullString()));
    MatcherAssert.assertThat(savedCaze.getTherapy().getUuid(), not(isEmptyOrNullString()));
    MatcherAssert.assertThat(savedCaze.getSymptoms().getUuid(), not(isEmptyOrNullString()));
    MatcherAssert.assertThat(savedCaze.getEpiData().getUuid(), not(isEmptyOrNullString()));
    MatcherAssert.assertThat(savedCaze.getEpiData().getExposures().get(0).getUuid(), not(isEmptyOrNullString()));
}

Example 57 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testSearchByFacilityTypeAndGroup.

@Test
public void testSearchByFacilityTypeAndGroup() {
    RDCF rdcf = creator.createRDCF();
    PersonReferenceDto personDto = creator.createPerson().toReference();
    CaseDataDto savedCaze1 = createCaseOfFacilityType(rdcf, personDto, FacilityType.HOSPITAL);
    CaseDataDto savedCaze2 = createCaseOfFacilityType(rdcf, personDto, FacilityType.MATERNITY_FACILITY);
    CaseDataDto savedCaze3 = createCaseOfFacilityType(rdcf, personDto, FacilityType.HOTEL);
    CaseDataDto savedCaze4 = createCaseOfFacilityType(rdcf, personDto, FacilityType.REFUGEE_ACCOMMODATION);
    MatcherAssert.assertThat(getCaseFacade().getIndexList(new CaseCriteria(), 0, 100, null), hasSize(4));
    final CaseCriteria facilityTypeGroupFilter = new CaseCriteria();
    facilityTypeGroupFilter.setFacilityTypeGroup(FacilityTypeGroup.MEDICAL_FACILITY);
    MatcherAssert.assertThat(getCaseFacade().getIndexList(facilityTypeGroupFilter, 0, 100, null), hasSize(2));
    final CaseCriteria facilityTypeAndGroupFilter = new CaseCriteria();
    facilityTypeAndGroupFilter.setFacilityTypeGroup(FacilityTypeGroup.MEDICAL_FACILITY);
    facilityTypeAndGroupFilter.setFacilityType(FacilityType.HOSPITAL);
    MatcherAssert.assertThat(getCaseFacade().getIndexList(facilityTypeAndGroupFilter, 0, 100, null), hasSize(1));
    final CaseCriteria facilityTypeFilter = new CaseCriteria();
    facilityTypeFilter.setFacilityType(FacilityType.HOTEL);
    final List<CaseIndexDto> indexListByFacilityTYpe = getCaseFacade().getIndexList(facilityTypeFilter, 0, 100, null);
    MatcherAssert.assertThat(indexListByFacilityTYpe, hasSize(1));
    Assert.assertEquals(indexListByFacilityTYpe.get(0).getUuid(), savedCaze3.getUuid());
    final CaseCriteria facilityTypeAndGroupNonMatchingFilter = new CaseCriteria();
    facilityTypeAndGroupNonMatchingFilter.setFacilityTypeGroup(FacilityTypeGroup.MEDICAL_FACILITY);
    facilityTypeAndGroupNonMatchingFilter.setFacilityType(FacilityType.HOTEL);
    MatcherAssert.assertThat(getCaseFacade().getIndexList(facilityTypeAndGroupNonMatchingFilter, 0, 100, null), hasSize(0));
}

Example 58 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testGetExportList.

@Test
public void testGetExportList() {
    RDCFEntities rdcfEntities = creator.createRDCFEntities("Region", "District", "Community", "Facility");
    RDCF rdcf = new RDCF(rdcfEntities);
    UserDto user = creator.createUser(rdcfEntities.region.getUuid(), rdcfEntities.district.getUuid(), rdcfEntities.facility.getUuid(), "Surv", "Sup", UserRole.SURVEILLANCE_SUPERVISOR);
    PersonDto cazePerson = creator.createPerson("Case", "Person");
    CaseDataDto caze = creator.createCase(user.toReference(), cazePerson.toReference(), Disease.EVD, CaseClassification.PROBABLE, InvestigationStatus.PENDING, new Date(), rdcfEntities);
    cazePerson.getAddress().setCity("City");
    getPersonFacade().savePerson(cazePerson);
    ExposureDto exposure = ExposureDto.build(ExposureType.TRAVEL);
    exposure.getLocation().setDetails("Ghana");
    exposure.setStartDate(new Date());
    exposure.setEndDate(new Date());
    caze.getEpiData().getExposures().add(exposure);
    caze.getSymptoms().setAbdominalPain(SymptomState.YES);
    caze = getCaseFacade().save(caze);
    Calendar cal = Calendar.getInstance();
    cal.add(Calendar.DATE, -1);
    creator.createSample(caze.toReference(), new Date(), new Date(), user.toReference(), SampleMaterial.BLOOD, rdcfEntities.facility);
    creator.createSample(caze.toReference(), cal.getTime(), cal.getTime(), user.toReference(), SampleMaterial.CRUST, rdcfEntities.facility);
    creator.createPathogenTest(caze, PathogenTestType.ANTIGEN_DETECTION, PathogenTestResultType.POSITIVE);
    creator.createPrescription(caze);
    ImmunizationDto immunization = creator.createImmunization(caze.getDisease(), caze.getPerson(), caze.getReportingUser(), ImmunizationStatus.ACQUIRED, MeansOfImmunization.VACCINATION, ImmunizationManagementStatus.COMPLETED, rdcf, DateHelper.subtractDays(new Date(), 10), DateHelper.subtractDays(new Date(), 5), DateHelper.subtractDays(new Date(), 1), null);
    creator.createImmunization(caze.getDisease(), caze.getPerson(), caze.getReportingUser(), ImmunizationStatus.ACQUIRED, MeansOfImmunization.VACCINATION, ImmunizationManagementStatus.COMPLETED, rdcf, DateHelper.subtractDays(new Date(), 8), DateHelper.subtractDays(new Date(), 7), null, null);
    VaccinationDto firstVaccination = creator.createVaccination(caze.getReportingUser(), immunization.toReference(), HealthConditionsDto.build(), DateHelper.subtractDays(new Date(), 7), Vaccine.OXFORD_ASTRA_ZENECA, VaccineManufacturer.ASTRA_ZENECA);
    creator.createVaccination(caze.getReportingUser(), immunization.toReference(), HealthConditionsDto.build(), DateHelper.subtractDays(new Date(), 4), Vaccine.MRNA_1273, VaccineManufacturer.MODERNA);
    VaccinationDto thirdVaccination = creator.createVaccination(caze.getReportingUser(), immunization.toReference(), HealthConditionsDto.build(), new Date(), Vaccine.COMIRNATY, VaccineManufacturer.BIONTECH_PFIZER);
    final String primaryPhone = "0000444888";
    final String primaryEmail = "primary@email.com";
    cazePerson = getPersonFacade().getPersonByUuid(cazePerson.getUuid());
    cazePerson.setPhone(primaryPhone);
    cazePerson.setEmailAddress(primaryEmail);
    cazePerson.getPersonContactDetails().add(PersonContactDetailDto.build(cazePerson.toReference(), false, PersonContactDetailType.PHONE, PhoneNumberType.LANDLINE, "", "0265590500", "", false, "", ""));
    cazePerson.getPersonContactDetails().add(PersonContactDetailDto.build(cazePerson.toReference(), false, PersonContactDetailType.EMAIL, null, "", "secondary@email.com", "", false, "", ""));
    cazePerson.getPersonContactDetails().add(PersonContactDetailDto.build(cazePerson.toReference(), false, PersonContactDetailType.OTHER, null, "SkypeID", "personSkype", "", false, "", ""));
    getPersonFacade().savePerson(cazePerson);
    List<CaseExportDto> results = getCaseFacade().getExportList(new CaseCriteria(), Collections.emptySet(), CaseExportType.CASE_SURVEILLANCE, 0, 100, null, Language.EN);
    // List should have one entry
    assertEquals(1, results.size());
    assertTrue(results.get(0).getSampleDateTime2().after(results.get(0).getSampleDateTime3()));
    // Make sure that everything that is added retrospectively (symptoms, sample
    // dates, lab results, address, travel history) is present
    CaseExportDto exportDto = results.get(0);
    assertNotNull(exportDto.getSymptoms());
    // assertNotNull(exportDto.getSampleDateTime1());
    // assertNotNull(exportDto.getSampleLab1());
    // assertTrue(StringUtils.isNotEmpty(exportDto.getAddress()));
    // assertTrue(StringUtils.isNotEmpty(exportDto.getTravelHistory()));
    assertEquals(primaryPhone, exportDto.getPhone());
    assertEquals(primaryEmail, exportDto.getEmailAddress());
    final String otherContactDetails = exportDto.getOtherContactDetails();
    assertTrue(otherContactDetails.contains("0265590500 (PHONE)"));
    assertTrue(otherContactDetails.contains("secondary@email.com (EMAIL)"));
    assertTrue(otherContactDetails.contains("personSkype (SkypeID)"));
    assertEquals(VaccinationStatus.VACCINATED, exportDto.getVaccinationStatus());
    assertEquals(thirdVaccination.getVaccineName(), exportDto.getVaccineName());
    assertEquals(firstVaccination.getVaccinationDate(), exportDto.getFirstVaccinationDate());
    assertEquals(thirdVaccination.getVaccinationDate(), exportDto.getLastVaccinationDate());
}

Example 59 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testSymptomsUpdatedByVisit.

@Test
public void testSymptomsUpdatedByVisit() {
    RDCF rdcf = creator.createRDCF();
    UserReferenceDto user = creator.createUser(rdcf).toReference();
    PersonReferenceDto cazePerson = creator.createPerson("Foo", "Bar").toReference();
    CaseDataDto caze = creator.createCase(user, cazePerson, Disease.CORONAVIRUS, CaseClassification.NOT_CLASSIFIED, InvestigationStatus.PENDING, new Date(), rdcf);
    caze.getSymptoms().setChestPain(SymptomState.YES);
    // Add a new visit to the case
    VisitDto visit = creator.createVisit(caze.getDisease(), caze.getPerson(), caze.getReportDate(), VisitStatus.COOPERATIVE, VisitOrigin.USER);
    visit.getSymptoms().setAbdominalPain(SymptomState.YES);
    visit.getSymptoms().setChestPain(SymptomState.NO);
    getCaseFacade().save(caze);
    getVisitFacade().saveVisit(visit);
    CaseDataDto updatedCase = getCaseFacade().getCaseDataByUuid(caze.getUuid());
    assertEquals(SymptomState.YES, updatedCase.getSymptoms().getChestPain());
    assertEquals(SymptomState.YES, updatedCase.getSymptoms().getAbdominalPain());
    // Update an existing visit
    visit.getSymptoms().setAcuteRespiratoryDistressSyndrome(SymptomState.YES);
    getVisitFacade().saveVisit(visit);
    updatedCase = getCaseFacade().getCaseDataByUuid(caze.getUuid());
    assertEquals(SymptomState.YES, updatedCase.getSymptoms().getChestPain());
    assertEquals(SymptomState.YES, updatedCase.getSymptoms().getAbdominalPain());
    assertEquals(SymptomState.YES, updatedCase.getSymptoms().getAcuteRespiratoryDistressSyndrome());
    assertTrue(updatedCase.getSymptoms().getSymptomatic());
}

Example 60 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testCaseCriteriaSharedWithReportingTool.

@Test
public void testCaseCriteriaSharedWithReportingTool() {
    RDCF rdcf = creator.createRDCF();
    UserDto user = creator.createUser(rdcf, UserRole.NATIONAL_USER);
    CaseDataDto sharedCase = creator.createCase(user.toReference(), creator.createPerson().toReference(), rdcf);
    ExternalShareInfo shareInfo = new ExternalShareInfo();
    shareInfo.setCaze(getCaseService().getByUuid(sharedCase.getUuid()));
    shareInfo.setSender(getUserService().getByUuid(user.getUuid()));
    shareInfo.setStatus(ExternalShareStatus.SHARED);
    getExternalShareInfoService().ensurePersisted(shareInfo);
    CaseDataDto notSharedCase = creator.createCase(user.toReference(), creator.createPerson().toReference(), rdcf);
    CaseCriteria caseCriteriaForShared = new CaseCriteria();
    caseCriteriaForShared.setOnlyEntitiesSharedWithExternalSurvTool(true);
    List<CaseIndexDto> indexList = getCaseFacade().getIndexList(caseCriteriaForShared, 0, 100, null);
    MatcherAssert.assertThat(indexList, hasSize(1));
    MatcherAssert.assertThat(indexList.get(0).getUuid(), is(sharedCase.getUuid()));
    CaseCriteria caseCriteriaForNotShared = new CaseCriteria();
    caseCriteriaForNotShared.setOnlyEntitiesNotSharedWithExternalSurvTool(true);
    indexList = getCaseFacade().getIndexList(caseCriteriaForNotShared, 0, 100, null);
    MatcherAssert.assertThat(indexList, hasSize(1));
    MatcherAssert.assertThat(indexList.get(0).getUuid(), is(notSharedCase.getUuid()));
}