Examples with RDCF de.symeda.sormas.backend.TestDataCreator.RDCF used on opensource projects

Example 1 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testGetCaseMeasurePerDistrict.

@Test
public void testGetCaseMeasurePerDistrict() {
    List<DataHelper.Pair<DistrictDto, BigDecimal>> caseMeasurePerDistrict = getCaseFacade().getCaseMeasurePerDistrict(null, null, Disease.EVD, CaseMeasure.CASE_COUNT);
    assertTrue(caseMeasurePerDistrict.isEmpty());
    RDCF rdcf1 = creator.createRDCF("Region", "District1", "Community", "Facility");
    RDCF rdcf2 = creator.createRDCF("Region", "District2", "Community", "Facility");
    UserDto user = creator.createUser(rdcf1, UserRole.NATIONAL_USER);
    CaseDataDto caze = creator.createCase(user.toReference(), creator.createPerson("Person", "One").toReference(), rdcf1);
    caseMeasurePerDistrict = getCaseFacade().getCaseMeasurePerDistrict(null, null, Disease.EVD, CaseMeasure.CASE_COUNT);
    assertEquals(1, caseMeasurePerDistrict.size());
    DataHelper.Pair<DistrictDto, BigDecimal> districtCaseCount = caseMeasurePerDistrict.get(0);
    assertEquals(rdcf1.district.getUuid(), districtCaseCount.getElement0().getUuid());
    assertEquals(1, districtCaseCount.getElement1().intValue());
    creator.createCase(user.toReference(), creator.createPerson("Person", "Two").toReference(), rdcf1);
    caseMeasurePerDistrict = getCaseFacade().getCaseMeasurePerDistrict(null, null, Disease.EVD, CaseMeasure.CASE_COUNT);
    assertEquals(1, caseMeasurePerDistrict.size());
    districtCaseCount = caseMeasurePerDistrict.get(0);
    assertEquals(rdcf1.district.getUuid(), districtCaseCount.getElement0().getUuid());
    assertEquals(2, districtCaseCount.getElement1().intValue());
    caze.setDistrict(rdcf2.district);
    getCaseFacade().save(caze);
    creator.createCase(user.toReference(), creator.createPerson("Person", "Three").toReference(), rdcf2);
    caseMeasurePerDistrict = getCaseFacade().getCaseMeasurePerDistrict(null, null, Disease.EVD, CaseMeasure.CASE_COUNT);
    assertEquals(2, caseMeasurePerDistrict.size());
    districtCaseCount = caseMeasurePerDistrict.get(0);
    assertEquals(rdcf1.district.getUuid(), districtCaseCount.getElement0().getUuid());
    assertEquals(1, districtCaseCount.getElement1().intValue());
    districtCaseCount = caseMeasurePerDistrict.get(1);
    assertEquals(rdcf2.district.getUuid(), districtCaseCount.getElement0().getUuid());
    assertEquals(2, districtCaseCount.getElement1().intValue());
}

Example 2 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testCaseCompletenessWhenCaseFound.

@Test
public void testCaseCompletenessWhenCaseFound() {
    RDCF rdcf = creator.createRDCF();
    UserDto user = creator.createUser(rdcf, UserRole.NATIONAL_USER);
    int casesWithNoCompletenessFound = getCaseFacade().updateCompleteness();
    MatcherAssert.assertThat(casesWithNoCompletenessFound, is(0));
    PersonDto cazePerson = creator.createPerson("Case", "Person", Sex.MALE, 1980, 1, 1);
    CaseDataDto caseNoCompleteness = creator.createCase(user.toReference(), cazePerson.toReference(), Disease.EVD, CaseClassification.PROBABLE, InvestigationStatus.PENDING, new Date(), rdcf);
    PersonDto cazePerson2 = creator.createPerson("Case2", "Person2", Sex.MALE, 1981, 1, 1);
    CaseDataDto caseWithCompleteness = creator.createCase(user.toReference(), cazePerson2.toReference(), Disease.EVD, CaseClassification.PROBABLE, InvestigationStatus.PENDING, DateUtils.addMinutes(new Date(), -3), rdcf);
    SessionImpl em = (SessionImpl) getEntityManager();
    QueryImplementor query2 = em.createQuery("select c from cases c where c.uuid=:uuid");
    query2.setParameter("uuid", caseWithCompleteness.getUuid());
    Case caseWithCompletenessSingleResult = (Case) query2.getSingleResult();
    caseWithCompletenessSingleResult.setCompleteness(0.7f);
    em.save(caseWithCompletenessSingleResult);
    int changedCases = getCaseFacade().updateCompleteness();
    Case completenessUpdateResult = getCaseService().getByUuid(caseNoCompleteness.getUuid());
    Case completenessUpdateResult2 = getCaseService().getByUuid(caseWithCompleteness.getUuid());
    MatcherAssert.assertThat(completenessUpdateResult.getCompleteness(), notNullValue());
    MatcherAssert.assertThat(completenessUpdateResult.getChangeDate(), equalTo(caseNoCompleteness.getChangeDate()));
    MatcherAssert.assertThat(completenessUpdateResult2.getCompleteness(), is(0.7f));
    MatcherAssert.assertThat(changedCases, is(1));
    int changedCasesAfterUpdateCompleteness = getCaseFacade().updateCompleteness();
    MatcherAssert.assertThat(changedCasesAfterUpdateCompleteness, is(0));
}

Example 3 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testCreateInvestigationTask.

@Test
public void testCreateInvestigationTask() {
    RDCF rdcf = creator.createRDCF();
    UserReferenceDto user = creator.createUser(rdcf, "First", "User", UserRole.SURVEILLANCE_SUPERVISOR).toReference();
    UserReferenceDto surveillanceOfficer = creator.createUser(rdcf, "Second", "User", UserRole.SURVEILLANCE_OFFICER).toReference();
    PersonReferenceDto person = creator.createPerson("Case", "Person").toReference();
    CaseDataDto caze = creator.createCase(user, person, rdcf);
    List<TaskDto> caseTasks = getTaskFacade().getAllPendingByCase(caze.toReference());
    assertEquals(surveillanceOfficer, caseTasks.get(0).getAssigneeUser());
}

Example 4 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testGetCasesByPersonUuids.

@Test
public void testGetCasesByPersonUuids() {
    UserReferenceDto user = creator.createUser(creator.createRDCFEntities(), UserRole.SURVEILLANCE_SUPERVISOR).toReference();
    RDCF rdcf = creator.createRDCF();
    PersonReferenceDto person1 = creator.createPerson().toReference();
    CaseDataDto case1 = getCaseFacade().save(creator.createCase(user, person1, rdcf));
    PersonReferenceDto person2 = creator.createPerson().toReference();
    CaseDataDto case2 = getCaseFacade().save(creator.createCase(user, person2, rdcf));
    List<CaseDataDto> casesByPerson = getCaseFacade().getByPersonUuids(Collections.singletonList(person1.getUuid()));
    assertEquals(1, casesByPerson.size());
    assertEquals(case1.getUuid(), casesByPerson.get(0).getUuid());
    assertNotEquals(case2.getUuid(), casesByPerson.get(0).getUuid());
    casesByPerson = getCaseFacade().getByPersonUuids(Arrays.asList(person1.getUuid(), person2.getUuid()));
    assertEquals(2, casesByPerson.size());
    assertEquals(case1.getUuid(), casesByPerson.get(0).getUuid());
    assertEquals(case2.getUuid(), casesByPerson.get(1).getUuid());
}

Example 5 with RDCF

use of de.symeda.sormas.backend.TestDataCreator.RDCF in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testMergeCase.

@Test
public void testMergeCase() throws IOException {
    useNationalUserLogin();
    // 1. Create
    // Create leadCase
    UserDto leadUser = creator.createUser("", "", "", "First", "User");
    UserReferenceDto leadUserReference = new UserReferenceDto(leadUser.getUuid());
    PersonDto leadPerson = creator.createPerson("Alex", "Miller");
    PersonReferenceDto leadPersonReference = new PersonReferenceDto(leadPerson.getUuid());
    RDCF leadRdcf = creator.createRDCF();
    CaseDataDto leadCase = creator.createCase(leadUserReference, leadPersonReference, Disease.DENGUE, CaseClassification.SUSPECT, InvestigationStatus.PENDING, new Date(), leadRdcf, (c) -> {
        c.setAdditionalDetails("Test additional details");
        c.setFollowUpComment("Test followup comment");
    });
    leadCase.setClinicianEmail("mail");
    leadCase.getEpiData().setActivityAsCaseDetailsKnown(YesNoUnknown.NO);
    getCaseFacade().save(leadCase);
    VisitDto leadVisit = creator.createVisit(leadCase.getDisease(), leadCase.getPerson(), leadCase.getReportDate());
    leadVisit.getSymptoms().setAnorexiaAppetiteLoss(SymptomState.YES);
    getVisitFacade().saveVisit(leadVisit);
    // Create otherCase
    UserDto otherUser = creator.createUser("", "", "", "Second", "User");
    UserReferenceDto otherUserReference = new UserReferenceDto(otherUser.getUuid());
    PersonDto otherPerson = creator.createPerson("Max", "Smith");
    otherPerson.setBirthWeight(2);
    getPersonFacade().savePerson(otherPerson);
    PersonReferenceDto otherPersonReference = new PersonReferenceDto(otherPerson.getUuid());
    RDCF otherRdcf = creator.createRDCF("Reg2", "Dis2", "Comm2", "Fac2", "Poe2");
    CaseDataDto otherCase = creator.createCase(otherUserReference, otherPersonReference, Disease.CHOLERA, CaseClassification.SUSPECT, InvestigationStatus.PENDING, new Date(), otherRdcf, (c) -> {
        c.setAdditionalDetails("Test other additional details");
        c.setFollowUpComment("Test other followup comment");
    });
    otherCase.setClinicianName("name");
    CaseReferenceDto otherCaseReference = getCaseFacade().getReferenceByUuid(otherCase.getUuid());
    ContactDto contact = creator.createContact(otherUserReference, otherUserReference, otherPersonReference, otherCase, new Date(), new Date(), null);
    Region region = creator.createRegion("");
    District district = creator.createDistrict("", region);
    SampleDto sample = creator.createSample(otherCaseReference, otherUserReference, creator.createFacility("", region, district, creator.createCommunity("", district)));
    TaskDto task = creator.createTask(TaskContext.CASE, TaskType.CASE_INVESTIGATION, TaskStatus.PENDING, otherCaseReference, new ContactReferenceDto(), new EventReferenceDto(), new Date(), otherUserReference);
    TreatmentDto treatment = creator.createTreatment(otherCase);
    PrescriptionDto prescription = creator.createPrescription(otherCase);
    ClinicalVisitDto visit = creator.createClinicalVisit(otherCase);
    otherCase.getEpiData().setActivityAsCaseDetailsKnown(YesNoUnknown.YES);
    final ArrayList<ActivityAsCaseDto> otherActivitiesAsCase = new ArrayList<>();
    ActivityAsCaseDto activityAsCaseDto = new ActivityAsCaseDto();
    activityAsCaseDto.setActivityAsCaseType(ActivityAsCaseType.GATHERING);
    otherActivitiesAsCase.add(activityAsCaseDto);
    otherCase.getEpiData().setActivitiesAsCase(otherActivitiesAsCase);
    getCaseFacade().save(otherCase);
    VisitDto otherVisit = creator.createVisit(otherCase.getDisease(), otherCase.getPerson(), otherCase.getReportDate());
    otherVisit.getSymptoms().setAbdominalPain(SymptomState.YES);
    getVisitFacade().saveVisit(otherVisit);
    EventDto event = creator.createEvent(otherUserReference);
    event.setDisease(otherCase.getDisease());
    getEventFacade().save(event);
    EventParticipantDto otherCaseEventParticipant = creator.createEventParticipant(event.toReference(), otherPerson, otherUserReference);
    otherCaseEventParticipant.setResultingCase(otherCaseReference);
    getEventParticipantFacade().saveEventParticipant(otherCaseEventParticipant);
    creator.createSurveillanceReport(otherUserReference, otherCaseReference);
    TravelEntryDto travelEntry = creator.createTravelEntry(otherPersonReference, otherUserReference, otherCase.getDisease(), otherRdcf.region, otherRdcf.district, otherRdcf.pointOfEntry);
    travelEntry.setResultingCase(otherCaseReference);
    travelEntry = getTravelEntryFacade().save(travelEntry);
    DocumentDto document = creator.createDocument(leadUserReference, "document.pdf", "application/pdf", 42L, DocumentRelatedEntityType.CASE, leadCase.getUuid(), "content".getBytes(StandardCharsets.UTF_8));
    DocumentDto otherDocument = creator.createDocument(leadUserReference, "other_document.pdf", "application/pdf", 42L, DocumentRelatedEntityType.CASE, otherCase.getUuid(), "other content".getBytes(StandardCharsets.UTF_8));
    // 2. Merge
    getCaseFacade().mergeCase(leadCase.getUuid(), otherCase.getUuid());
    // 3. Test
    CaseDataDto mergedCase = getCaseFacade().getCaseDataByUuid(leadCase.getUuid());
    // Check no values
    assertNull(mergedCase.getClassificationComment());
    // Check 'lead and other have different values'
    assertEquals(leadCase.getDisease(), mergedCase.getDisease());
    // Check 'lead has value, other has not'
    assertEquals(leadCase.getClinicianEmail(), mergedCase.getClinicianEmail());
    // Check 'lead has no value, other has'
    assertEquals(otherCase.getClinicianName(), mergedCase.getClinicianName());
    PersonDto mergedPerson = getPersonFacade().getPersonByUuid(mergedCase.getPerson().getUuid());
    // Check no values
    assertNull(mergedPerson.getBirthdateDD());
    // Check 'lead and other have different values'
    assertEquals(leadCase.getPerson().getFirstName(), mergedPerson.getFirstName());
    // Check 'lead has value, other has not'
    assertEquals(leadCase.getPerson().getLastName(), mergedPerson.getLastName());
    // Check 'lead has no value, other has'
    assertEquals(otherPerson.getBirthWeight(), mergedPerson.getBirthWeight());
    // Check merge comments
    assertEquals("Test additional details Test other additional details", mergedCase.getAdditionalDetails());
    assertEquals("Test followup comment Test other followup comment", mergedCase.getFollowUpComment());
    // 4. Test Reference Changes
    // 4.1 Contacts
    List<String> contactUuids = new ArrayList<>();
    contactUuids.add(contact.getUuid());
    assertEquals(leadCase.getUuid(), getContactFacade().getByUuids(contactUuids).get(0).getCaze().getUuid());
    // 4.2 Samples
    List<String> sampleUuids = new ArrayList<>();
    sampleUuids.add(sample.getUuid());
    assertEquals(leadCase.getUuid(), getSampleFacade().getByUuids(sampleUuids).get(0).getAssociatedCase().getUuid());
    // 4.3 Tasks
    List<String> taskUuids = new ArrayList<>();
    taskUuids.add(task.getUuid());
    assertEquals(leadCase.getUuid(), getTaskFacade().getByUuids(taskUuids).get(0).getCaze().getUuid());
    // 4.4 Treatments
    List<String> treatmentUuids = new ArrayList<>();
    treatmentUuids.add(treatment.getUuid());
    assertEquals(leadCase.getTherapy().getUuid(), getTreatmentFacade().getByUuids(treatmentUuids).get(0).getTherapy().getUuid());
    // 4.5 Prescriptions
    List<String> prescriptionUuids = new ArrayList<>();
    prescriptionUuids.add(prescription.getUuid());
    assertEquals(leadCase.getTherapy().getUuid(), getPrescriptionFacade().getByUuids(prescriptionUuids).get(0).getTherapy().getUuid());
    // 4.6 Clinical Visits
    List<String> visitUuids = new ArrayList<>();
    visitUuids.add(visit.getUuid());
    assertEquals(leadCase.getClinicalCourse().getUuid(), getClinicalVisitFacade().getByUuids(visitUuids).get(0).getClinicalCourse().getUuid());
    // 4.7 Visits;
    List<String> mergedVisits = getVisitFacade().getIndexList(new VisitCriteria().caze(mergedCase.toReference()), null, null, null).stream().map(VisitIndexDto::getUuid).collect(Collectors.toList());
    assertEquals(2, mergedVisits.size());
    assertTrue(mergedVisits.contains(leadVisit.getUuid()));
    assertTrue(mergedVisits.contains(otherVisit.getUuid()));
    // and symptoms
    assertEquals(SymptomState.YES, mergedCase.getSymptoms().getAbdominalPain());
    assertEquals(SymptomState.YES, mergedCase.getSymptoms().getAnorexiaAppetiteLoss());
    assertTrue(mergedCase.getSymptoms().getSymptomatic());
    // 4.8 Linked Events
    assertEquals(1, getEventFacade().count(new EventCriteria().caze(mergedCase.toReference())));
    // 4.8 Linked Surveillance Reports
    List<SurveillanceReportDto> surveillanceReportList = getSurveillanceReportFacade().getByCaseUuids(Collections.singletonList(mergedCase.getUuid()));
    MatcherAssert.assertThat(surveillanceReportList, hasSize(1));
    // 5 Documents
    List<DocumentDto> mergedDocuments = getDocumentFacade().getDocumentsRelatedToEntity(DocumentRelatedEntityType.CASE, leadCase.getUuid());
    assertEquals(2, mergedDocuments.size());
    List<String> documentUuids = mergedDocuments.stream().map(DocumentDto::getUuid).collect(Collectors.toList());
    assertTrue(documentUuids.contains(document.getUuid()));
    assertTrue(documentUuids.contains(otherDocument.getUuid()));
    // 10 Activities as case
    final EpiDataDto epiData = mergedCase.getEpiData();
    assertEquals(YesNoUnknown.YES, epiData.getActivityAsCaseDetailsKnown());
    final List<ActivityAsCaseDto> activitiesAsCase = epiData.getActivitiesAsCase();
    assertEquals(1, activitiesAsCase.size());
    assertEquals(ActivityAsCaseType.GATHERING, activitiesAsCase.get(0).getActivityAsCaseType());
    // Travel entry
    travelEntry = getTravelEntryFacade().getByUuid(travelEntry.getUuid());
    assertEquals(mergedCase.toReference(), travelEntry.getResultingCase());
}