Examples with CURATION_USER de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER used on opensource projects

Example 1 with CURATION_USER

use of de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER in project webanno by webanno.

the class CuratedDocumentsExporterTest method thatImportingCorrectionProjectWorks_3_6_1.

@Test
public void thatImportingCorrectionProjectWorks_3_6_1() throws Exception {
    project.setMode(PROJECT_TYPE_CORRECTION);
    // Export the project and import it again
    List<Pair<SourceDocument, String>> imported = runImportAndFetchDocuments(new ZipFile("src/test/resources/exports/Export+Test+-+Curated+correction+project_3_6_1.zip"));
    // Check that the curation for the document in the project is imported
    assertThat(imported).extracting(p -> p.getKey().getName()).containsExactlyInAnyOrder("example_sentence.txt");
    // Since WebAnno 3.5.x, the CORRECTION_USER CAS is stored with the annotations
    assertThat(imported).extracting(Pair::getValue).containsExactlyInAnyOrder(CURATION_USER);
}

Example 2 with CURATION_USER

use of de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER in project webanno by webanno.

the class CuratedDocumentsExporterTest method thatImportingAnnotationProjectWorks_3_6_1.

@Test
public void thatImportingAnnotationProjectWorks_3_6_1() throws Exception {
    project.setMode(PROJECT_TYPE_ANNOTATION);
    // Export the project and import it again
    List<Pair<SourceDocument, String>> imported = runImportAndFetchDocuments(new ZipFile("src/test/resources/exports/Export+Test+-+Curated+annotation+project_3_6_1.zip"));
    // Check that the curation for the document in the project is imported
    assertThat(imported).extracting(p -> p.getKey().getName()).containsExactlyInAnyOrder("example_sentence.txt");
    assertThat(imported).extracting(Pair::getValue).containsExactlyInAnyOrder(CURATION_USER);
}

Example 3 with CURATION_USER

use of de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER in project webanno by webanno.

the class CuratedDocumentsExporterTest method thatImportingCorrectionProjectWorks_3_4_x.

@Test
public void thatImportingCorrectionProjectWorks_3_4_x() throws Exception {
    project.setMode(PROJECT_TYPE_CORRECTION);
    // Export the project and import it again
    List<Pair<SourceDocument, String>> imported = runImportAndFetchDocuments(new ZipFile("src/test/resources/exports/Export+Test+-+Curated+correction+project_3_4_8.zip"));
    // Check that the curation for the document in the project is imported
    assertThat(imported).extracting(p -> p.getKey().getName()).containsExactlyInAnyOrder("example_sentence.txt", "example_sentence.txt");
    // Before WebAnno 3.5.x, the CORRECTION_USER CAS was stored with the curations
    assertThat(imported).extracting(Pair::getValue).containsExactlyInAnyOrder(CURATION_USER, CORRECTION_USER);
}

Example 4 with CURATION_USER

use of de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER in project webanno by webanno.

the class ProjectCasDoctorPanel method actionRepair.

private void actionRepair(AjaxRequestTarget aTarget, Form<?> aForm) throws IOException, UIMAException, ClassNotFoundException {
    CasDoctor casDoctor = new CasDoctor();
    casDoctor.setApplicationContext(ApplicationContextProvider.getApplicationContext());
    casDoctor.setFatalChecks(false);
    casDoctor.setRepairClasses(formModel.repairs);
    Project project = getModelObject();
    formModel.messageSets = new ArrayList<>();
    for (SourceDocument sd : documentService.listSourceDocuments(project)) {
        // Repair INITIAL CAS
        {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [INITIAL]");
            try {
                casStorageService.forceActionOnCas(sd, INITIAL_CAS_PSEUDO_USER, (doc, user) -> createOrReadInitialCasWithoutSaving(doc, messageSet), // 
                (cas) -> casDoctor.repair(project, cas, messageSet.messages), true);
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error repairing initial CAS for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error repairing initial CAS for [{}]", sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Repair CORRECTION_USER CAS if necessary
        if (PROJECT_TYPE_CORRECTION.equals(project.getMode())) {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + CORRECTION_USER + "]");
            try {
                casStorageService.forceActionOnCas(sd, CORRECTION_USER, (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                (cas) -> casDoctor.repair(project, cas, messageSet.messages), true);
            } catch (FileNotFoundException e) {
                // If there is no CAS for the correction user, then correction has not started
                // yet. This is not a problem, so we can ignore it. (REC: I wonder if this
                // assumption is correct in curation mode...)
                messageSet.messages.add(LogMessage.info(getClass(), "Correction seems to have not yet started."));
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking annotations for [" + CORRECTION_USER + "] for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error checking annotations for [{}] for [{}]", CORRECTION_USER, sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Repair CURATION_USER CAS
        {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + CURATION_USER + "]");
            try {
                casStorageService.forceActionOnCas(sd, CURATION_USER, (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                (cas) -> casDoctor.repair(project, cas, messageSet.messages), true);
            } catch (FileNotFoundException e) {
                if (asList(CURATION_IN_PROGRESS, CURATION_FINISHED).contains(sd.getState())) {
                    messageSet.messages.add(LogMessage.error(getClass(), "Curation CAS missing."));
                } else {
                    // If there is no CAS for the curation user, then curation has not started
                    // yet. This is not a problem, so we can ignore it.
                    messageSet.messages.add(LogMessage.info(getClass(), "Curation has not started."));
                }
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking annotations for [" + CURATION_USER + "] for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error checking annotations for [{}] for [{}]", CURATION_USER, sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Repair regular annotator CASes
        for (AnnotationDocument ad : documentService.listAnnotationDocuments(sd)) {
            if (documentService.existsAnnotationCas(ad)) {
                LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + ad.getUser() + "]");
                try {
                    casStorageService.forceActionOnCas(sd, ad.getUser(), (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                    (cas) -> casDoctor.repair(project, cas, messageSet.messages), true);
                } catch (Exception e) {
                    messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error repairing annotations of user [" + ad.getUser() + "] for [" + sd.getName() + "]: " + e.getMessage()));
                    LOG.error("Error repairing annotations of user [{}] for [{}]", ad.getUser(), sd.getName(), e);
                }
                noticeIfThereAreNoMessages(messageSet);
                formModel.messageSets.add(messageSet);
            }
        }
    }
    aTarget.add(this);
}

Example 5 with CURATION_USER

use of de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.CURATION_USER in project webanno by webanno.

the class ProjectCasDoctorPanel method actionCheck.

private void actionCheck(AjaxRequestTarget aTarget, Form<?> aForm) throws IOException, UIMAException, ClassNotFoundException {
    CasDoctor casDoctor = new CasDoctor();
    casDoctor.setApplicationContext(ApplicationContextProvider.getApplicationContext());
    casDoctor.setFatalChecks(false);
    casDoctor.setCheckClasses(CasDoctor.scanChecks());
    Project project = getModelObject();
    formModel.messageSets = new ArrayList<>();
    for (SourceDocument sd : documentService.listSourceDocuments(project)) {
        // Check INITIAL CAS
        {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [INITIAL]");
            try {
                casStorageService.forceActionOnCas(sd, INITIAL_CAS_PSEUDO_USER, (doc, user) -> createOrReadInitialCasWithoutSaving(doc, messageSet), // 
                (cas) -> casDoctor.analyze(project, cas, messageSet.messages), false);
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking initial CAS for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error checking initial CAS for [{}]", sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Check CORRECTION_USER CAS if necessary
        if (WebAnnoConst.PROJECT_TYPE_CORRECTION.equals(project.getMode())) {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + CORRECTION_USER + "]");
            try {
                casStorageService.forceActionOnCas(sd, CORRECTION_USER, (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                (cas) -> casDoctor.analyze(project, cas, messageSet.messages), false);
            } catch (FileNotFoundException e) {
                // If there is no CAS for the correction user, then correction has not started
                // yet. This is not a problem, so we can ignore it. (REC: I wonder if this
                // assumption is correct in curation mode...)
                messageSet.messages.add(LogMessage.info(getClass(), "Correction seems to have not yet started."));
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking annotations for [" + CORRECTION_USER + "] for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error checking annotations for [{}] for [{}]", CORRECTION_USER, sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Check CURATION_USER CAS
        {
            LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + CURATION_USER + "]");
            try {
                casStorageService.forceActionOnCas(sd, CURATION_USER, (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                (cas) -> casDoctor.analyze(project, cas, messageSet.messages), false);
            } catch (FileNotFoundException e) {
                // If there is no CAS for the curation user, then curation has not started yet.
                // This is not a problem, so we can ignore it.
                messageSet.messages.add(LogMessage.info(getClass(), "Curation seems to have not yet started."));
            } catch (Exception e) {
                messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking annotations for [" + CURATION_USER + "] for [" + sd.getName() + "]: " + e.getMessage()));
                LOG.error("Error checking annotations for [{}] for [{}]", CURATION_USER, sd.getName(), e);
            }
            noticeIfThereAreNoMessages(messageSet);
            formModel.messageSets.add(messageSet);
        }
        // Check regular annotator CASes
        for (AnnotationDocument ad : documentService.listAnnotationDocuments(sd)) {
            if (documentService.existsAnnotationCas(ad)) {
                LogMessageSet messageSet = new LogMessageSet(sd.getName() + " [" + ad.getUser() + "]");
                try {
                    casStorageService.forceActionOnCas(ad.getDocument(), ad.getUser(), (doc, user) -> casStorageService.readCas(doc, user, UNMANAGED_NON_INITIALIZING_ACCESS), // 
                    (cas) -> casDoctor.analyze(project, cas, messageSet.messages), false);
                } catch (Exception e) {
                    messageSet.messages.add(new LogMessage(getClass(), LogLevel.ERROR, "Error checking annotations of user [" + ad.getUser() + "] for [" + sd.getName() + "]: " + e.getMessage()));
                    LOG.error("Error checking annotations of user [{}] for [{}]", ad.getUser(), sd.getName(), e);
                }
                noticeIfThereAreNoMessages(messageSet);
                formModel.messageSets.add(messageSet);
            }
        }
    }
    aTarget.add(this);
}