Examples with VComment de.tudarmstadt.ukp.clarin.webanno.api.annotation.rendering.model.VComment used on opensource projects

Example 1 with VComment

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.rendering.model.VComment in project webanno by webanno.

the class RelationRenderer method render.

@Override
public void render(final JCas aJcas, List<AnnotationFeature> aFeatures, VDocument aResponse, AnnotatorState aBratAnnotatorModel) {
    List<AnnotationFeature> visibleFeatures = aFeatures.stream().filter(f -> f.isVisible() && f.isEnabled()).collect(Collectors.toList());
    ArcAdapter typeAdapter = getTypeAdapter();
    Type type = getType(aJcas.getCas(), typeAdapter.getAnnotationTypeName());
    int windowBegin = aBratAnnotatorModel.getWindowBeginOffset();
    int windowEnd = aBratAnnotatorModel.getWindowEndOffset();
    Feature dependentFeature = type.getFeatureByBaseName(typeAdapter.getTargetFeatureName());
    Feature governorFeature = type.getFeatureByBaseName(typeAdapter.getSourceFeatureName());
    Type spanType = getType(aJcas.getCas(), typeAdapter.getAttachTypeName());
    Feature arcSpanFeature = spanType.getFeatureByBaseName(typeAdapter.getAttachFeatureName());
    FeatureStructure dependentFs;
    FeatureStructure governorFs;
    Map<Integer, Set<Integer>> relationLinks = getRelationLinks(aJcas, windowBegin, windowEnd, type, dependentFeature, governorFeature, arcSpanFeature);
    // if this is a governor for more than one dependent, avoid duplicate yield
    List<Integer> yieldDeps = new ArrayList<>();
    for (AnnotationFS fs : selectCovered(aJcas.getCas(), type, windowBegin, windowEnd)) {
        if (typeAdapter.getAttachFeatureName() != null) {
            dependentFs = fs.getFeatureValue(dependentFeature).getFeatureValue(arcSpanFeature);
            governorFs = fs.getFeatureValue(governorFeature).getFeatureValue(arcSpanFeature);
        } else {
            dependentFs = fs.getFeatureValue(dependentFeature);
            governorFs = fs.getFeatureValue(governorFeature);
        }
        String bratTypeName = TypeUtil.getUiTypeName(typeAdapter);
        Map<String, String> features = getFeatures(typeAdapter, fs, visibleFeatures);
        if (dependentFs == null || governorFs == null) {
            RequestCycle requestCycle = RequestCycle.get();
            IPageRequestHandler handler = PageRequestHandlerTracker.getLastHandler(requestCycle);
            Page page = (Page) handler.getPage();
            StringBuilder message = new StringBuilder();
            message.append("Relation [" + typeAdapter.getLayer().getName() + "] with id [" + getAddr(fs) + "] has loose ends - cannot render.");
            if (typeAdapter.getAttachFeatureName() != null) {
                message.append("\nRelation [" + typeAdapter.getLayer().getName() + "] attached to feature [" + typeAdapter.getAttachFeatureName() + "].");
            }
            message.append("\nDependent: " + dependentFs);
            message.append("\nGovernor: " + governorFs);
            page.warn(message.toString());
            continue;
        }
        aResponse.add(new VArc(typeAdapter.getLayer(), fs, bratTypeName, governorFs, dependentFs, features));
        // Render errors if required features are missing
        renderRequiredFeatureErrors(visibleFeatures, fs, aResponse);
        if (relationLinks.keySet().contains(getAddr(governorFs)) && !yieldDeps.contains(getAddr(governorFs))) {
            yieldDeps.add(getAddr(governorFs));
            // sort the annotations (begin, end)
            List<Integer> sortedDepFs = new ArrayList<>(relationLinks.get(getAddr(governorFs)));
            sortedDepFs.sort(comparingInt(arg0 -> selectByAddr(aJcas, arg0).getBegin()));
            String cm = getYieldMessage(aJcas, sortedDepFs);
            aResponse.add(new VComment(governorFs, VCommentType.YIELD, cm));
        }
    }
}

Example 2 with VComment

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.rendering.model.VComment in project webanno by webanno.

the class BratRenderer method render.

/**
 * wrap JSON responses to BRAT visualizer
 *
 * @param aResponse
 *            the response.
 * @param aState
 *            the annotator model.
 * @param aJCas
 *            the JCas.
 * @param aAnnotationService
 *            the annotation service.s
 */
public static void render(GetDocumentResponse aResponse, AnnotatorState aState, VDocument aVDoc, JCas aJCas, AnnotationSchemaService aAnnotationService, ColoringStrategy aColoringStrategy) {
    aResponse.setRtlMode(ScriptDirection.RTL.equals(aState.getScriptDirection()));
    aResponse.setFontZoom(aState.getPreferences().getFontZoom());
    // Render invisible baseline annotations (sentence, tokens)
    renderTokenAndSentence(aJCas, aResponse, aState);
    // Render visible (custom) layers
    Map<String[], Queue<String>> colorQueues = new HashMap<>();
    for (AnnotationLayer layer : aVDoc.getAnnotationLayers()) {
        ColoringStrategy coloringStrategy = aColoringStrategy != null ? aColoringStrategy : ColoringStrategy.getStrategy(aAnnotationService, layer, aState.getPreferences(), colorQueues);
        TypeAdapter typeAdapter = aAnnotationService.getAdapter(layer);
        for (VSpan vspan : aVDoc.spans(layer.getId())) {
            List<Offsets> offsets = toOffsets(vspan.getRanges());
            String bratLabelText = TypeUtil.getUiLabelText(typeAdapter, vspan.getFeatures());
            String bratHoverText = TypeUtil.getUiHoverText(typeAdapter, vspan.getHoverFeatures());
            String color;
            if (vspan.getColorHint() == null) {
                color = getColor(vspan, coloringStrategy, bratLabelText);
            } else {
                color = vspan.getColorHint();
            }
            aResponse.addEntity(new Entity(vspan.getVid(), vspan.getType(), offsets, bratLabelText, color, bratHoverText));
        }
        for (VArc varc : aVDoc.arcs(layer.getId())) {
            String bratLabelText;
            if (varc.getLabelHint() == null) {
                bratLabelText = TypeUtil.getUiLabelText(typeAdapter, varc.getFeatures());
            } else {
                bratLabelText = varc.getLabelHint();
            }
            String color;
            if (varc.getColorHint() == null) {
                color = getColor(varc, coloringStrategy, bratLabelText);
            } else {
                color = varc.getColorHint();
            }
            aResponse.addRelation(new Relation(varc.getVid(), varc.getType(), getArgument(varc.getSource(), varc.getTarget()), bratLabelText, color));
        }
    }
    List<Sentence> sentences = new ArrayList<>(select(aJCas, Sentence.class));
    for (VComment vcomment : aVDoc.comments()) {
        String type;
        switch(vcomment.getCommentType()) {
            case ERROR:
                type = AnnotationComment.ANNOTATION_ERROR;
                break;
            case INFO:
                type = AnnotationComment.ANNOTATOR_NOTES;
                break;
            case YIELD:
                type = "Yield";
                break;
            default:
                type = AnnotationComment.ANNOTATOR_NOTES;
                break;
        }
        AnnotationFS fs;
        if (!vcomment.getVid().isSynthetic() && ((fs = selectByAddr(aJCas, vcomment.getVid().getId())) instanceof Sentence)) {
            int index = sentences.indexOf(fs) + 1;
            aResponse.addComment(new SentenceComment(index, type, vcomment.getComment()));
        } else {
            aResponse.addComment(new AnnotationComment(vcomment.getVid(), type, vcomment.getComment()));
        }
    }
    // Render markers
    for (VMarker vmarker : aVDoc.getMarkers()) {
        if (vmarker instanceof VAnnotationMarker) {
            VAnnotationMarker marker = (VAnnotationMarker) vmarker;
            aResponse.addMarker(new AnnotationMarker(vmarker.getType(), marker.getVid()));
        } else if (vmarker instanceof VSentenceMarker) {
            VSentenceMarker marker = (VSentenceMarker) vmarker;
            aResponse.addMarker(new SentenceMarker(vmarker.getType(), marker.getIndex()));
        } else if (vmarker instanceof VTextMarker) {
            VTextMarker marker = (VTextMarker) vmarker;
            aResponse.addMarker(new TextMarker(marker.getType(), marker.getBegin(), marker.getEnd()));
        } else {
            LOG.warn("Unknown how to render marker: [" + vmarker + "]");
        }
    }
}