Examples with SpanDiffAdapter de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter used on opensource projects

Example 6 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class CasDiff2Test method spanLabelLabelTest.

@Test
public void spanLabelLabelTest() throws Exception {
    Map<String, List<JCas>> casByUser = DiffUtils.load("casdiff/spanLabel/user1.conll", "casdiff/spanLabel/user2.conll");
    List<String> entryTypes = asList(POS.class.getName());
    List<? extends DiffAdapter> diffAdapters = asList(new SpanDiffAdapter(POS.class.getName(), "PosValue"));
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    result.print(System.out);
    assertEquals(26, result.size());
    assertEquals(1, result.getDifferingConfigurationSets().size());
    assertEquals(0, result.getIncompleteConfigurationSets().size());
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(result, entryTypes.get(0), "PosValue", casByUser);
    assertEquals(0.958730d, agreement.getAgreement(), 0.000001d);
    assertEquals(0, agreement.getIncompleteSetsByPosition().size());
}

Example 7 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class CasDiff2Test method multiLinkWithRoleLabelDifferenceTest2.

@Test
public void multiLinkWithRoleLabelDifferenceTest2() throws Exception {
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasA, 0, 0, DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    JCas jcasB = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasB, 0, 0, DiffUtils.makeLinkFS(jcasB, "slot2", 0, 0));
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(jcasA));
    casByUser.put("user2", asList(jcasB));
    List<String> entryTypes = asList(DiffUtils.HOST_TYPE);
    SpanDiffAdapter adapter = new SpanDiffAdapter(DiffUtils.HOST_TYPE);
    adapter.addLinkFeature("links", "role", "target");
    List<? extends DiffAdapter> diffAdapters = asList(adapter);
    DiffResult diff = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_ROLE_AS_LABEL, casByUser);
    diff.print(System.out);
    assertEquals(2, diff.size());
    assertEquals(1, diff.getDifferingConfigurationSets().size());
    assertEquals(0, diff.getIncompleteConfigurationSets().size());
    // Check against new impl
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(diff, DiffUtils.HOST_TYPE, "links", casByUser);
    // Asserts
    System.out.printf("Agreement: %s%n", agreement.toString());
    AgreementUtils.dumpAgreementStudy(System.out, agreement);
    assertEquals(0.0d, agreement.getAgreement(), 0.00001d);
}

Example 8 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class CasDiff2Test method multiLinkWithRoleNoDifferenceTest.

@Test
public void multiLinkWithRoleNoDifferenceTest() throws Exception {
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasA, 0, 0, DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    DiffUtils.makeLinkHostFS(jcasA, 10, 10, DiffUtils.makeLinkFS(jcasA, "slot1", 10, 10));
    JCas jcasB = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasB, 0, 0, DiffUtils.makeLinkFS(jcasB, "slot1", 0, 0));
    DiffUtils.makeLinkHostFS(jcasB, 10, 10, DiffUtils.makeLinkFS(jcasB, "slot1", 10, 10));
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(jcasA));
    casByUser.put("user2", asList(jcasB));
    List<String> entryTypes = asList(DiffUtils.HOST_TYPE);
    SpanDiffAdapter adapter = new SpanDiffAdapter(DiffUtils.HOST_TYPE);
    adapter.addLinkFeature("links", "role", "target");
    List<? extends DiffAdapter> diffAdapters = asList(adapter);
    DiffResult diff = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    diff.print(System.out);
    assertEquals(4, diff.size());
    assertEquals(0, diff.getDifferingConfigurationSets().size());
    assertEquals(0, diff.getIncompleteConfigurationSets().size());
    // Check against new impl
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(diff, DiffUtils.HOST_TYPE, "links", casByUser);
    // Asserts
    System.out.printf("Agreement: %s%n", agreement.toString());
    AgreementUtils.dumpAgreementStudy(System.out, agreement);
    assertEquals(1.0d, agreement.getAgreement(), 0.00001d);
}

Example 9 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class CasDiff2Test method singleNoDifferencesWithAdditionalCas1Test.

@Test
public void singleNoDifferencesWithAdditionalCas1Test() throws Exception {
    JCas user1 = JCasFactory.createJCas();
    user1.setDocumentText("test");
    JCas user2 = JCasFactory.createJCas();
    user2.setDocumentText("test");
    JCas user3 = JCasFactory.createJCas();
    user3.setDocumentText("test");
    POS pos3 = new POS(user3, 0, 4);
    pos3.setPosValue("test");
    pos3.addToIndexes();
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(user1));
    casByUser.put("user2", asList(user2));
    casByUser.put("user3", asList(user3));
    List<String> entryTypes = asList(POS.class.getName());
    List<SpanDiffAdapter> diffAdapters = asList(SpanDiffAdapter.POS);
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    result.print(System.out);
    casByUser.remove("user3");
    AgreementResult agreement = AgreementUtils.getAgreement(ConcreteAgreementMeasure.KRIPPENDORFF_ALPHA_NOMINAL_AGREEMENT, false, result, entryTypes.get(0), "PosValue", casByUser);
    assertEquals(1, agreement.getTotalSetCount());
    assertEquals(1, agreement.getIrrelevantSets().size());
    assertEquals(0, agreement.getRelevantSetCount());
}

Example 10 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class CopyAnnotationTest method copyLinkToExistingButDiffLinkTest.

@Test
public void copyLinkToExistingButDiffLinkTest() throws Exception {
    JCas mergeCAs = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem("f1"));
    Type type = mergeCAs.getTypeSystem().getType(DiffUtils.HOST_TYPE);
    Feature feature = type.getFeatureByBaseName("f1");
    AnnotationFS mergeFs = DiffUtils.makeLinkHostMultiSPanFeatureFS(mergeCAs, 0, 0, feature, "A", DiffUtils.makeLinkFS(mergeCAs, "slot1", 0, 0));
    FeatureStructure copyFS = DiffUtils.makeLinkFS(mergeCAs, "slot2", 0, 0);
    List<FeatureStructure> linkFs = new ArrayList<>();
    linkFs.add(copyFS);
    WebAnnoCasUtil.setLinkFeatureValue(mergeFs, type.getFeatureByBaseName("links"), linkFs);
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem("f1"));
    DiffUtils.makeLinkHostMultiSPanFeatureFS(jcasA, 0, 0, feature, "A", DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(mergeCAs));
    casByUser.put("user2", asList(jcasA));
    List<String> entryTypes = asList(DiffUtils.HOST_TYPE);
    CasDiff2.SpanDiffAdapter adapter = new CasDiff2.SpanDiffAdapter(DiffUtils.HOST_TYPE);
    adapter.addLinkFeature("links", "role", "target");
    List<? extends CasDiff2.DiffAdapter> diffAdapters = asList(adapter);
    CasDiff2.DiffResult diff = CasDiff2.doDiff(entryTypes, diffAdapters, CasDiff2.LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    assertEquals(0, diff.getDifferingConfigurationSets().size());
    assertEquals(2, diff.getIncompleteConfigurationSets().size());
}