Examples with SpanDiffAdapter de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter used on opensource projects

Example 16 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class MergeCasTest method simpleSpanDiffWithLabelStackingTest.

@Test
public void simpleSpanDiffWithLabelStackingTest() throws Exception {
    Map<String, List<JCas>> casByUser = DiffUtils.loadWebAnnoTSV(null, "mergecas/simplespan/1sentenceNEstacked.tsv", "mergecas/simplespan/1sentenceNEstacked.tsv");
    List<String> entryTypes = asList(NamedEntity.class.getName());
    List<SpanDiffAdapter> diffAdapters = asList(SpanDiffAdapter.NER);
    addRandomMergeCas(casByUser);
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    JCas mergeCas = MergeCas.reMergeCas(result, getSingleCasByUser(casByUser));
    casByUser = new HashMap<>();
    JCas actual = DiffUtils.readWebAnnoTSV("mergecas/simplespan/1sentenceNEempty.tsv", null);
    casByUser.put("actual", asList(actual));
    casByUser.put("merge", asList(mergeCas));
    result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    assertEquals(0, result.getDifferingConfigurationSets().size());
    assertEquals(0, result.getIncompleteConfigurationSets().size());
}

Example 17 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class MergeCasTest method multiLinkWithRoleTargetDifferenceTest.

@Test
public void multiLinkWithRoleTargetDifferenceTest() throws Exception {
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasA, 0, 0, DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    JCas jcasB = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasB, 0, 0, DiffUtils.makeLinkFS(jcasB, "slot1", 10, 10));
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(jcasA));
    casByUser.put("user2", asList(jcasB));
    casByUser.put(CURATION_USER, asList(jcasA));
    List<String> entryTypes = asList(DiffUtils.HOST_TYPE);
    SpanDiffAdapter adapter = new SpanDiffAdapter(DiffUtils.HOST_TYPE);
    adapter.addLinkFeature("links", "role", "target");
    List<? extends DiffAdapter> diffAdapters = asList(adapter);
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    result.print(System.out);
    JCas mergeCas = MergeCas.reMergeCas(result, getSingleCasByUser(casByUser));
    Type hostType = mergeCas.getTypeSystem().getType(DiffUtils.HOST_TYPE);
    int numHost = CasUtil.select(mergeCas.getCas(), hostType).size();
    assertEquals(1, numHost);
    for (FeatureStructure host : CasUtil.select(mergeCas.getCas(), hostType)) {
        ArrayFS linkFss = (ArrayFS) WebAnnoCasUtil.getFeatureFS(host, "links");
        assertEquals(0, linkFss.toArray().length);
    }
}

Example 18 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class MergeCasTest method multiLinkWithRoleLabelDifferenceTest.

@Test
public void multiLinkWithRoleLabelDifferenceTest() throws Exception {
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasA, 0, 0, DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    JCas jcasB = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem());
    DiffUtils.makeLinkHostFS(jcasB, 0, 0, DiffUtils.makeLinkFS(jcasB, "slot2", 0, 0));
    Map<String, List<JCas>> casByUser = new LinkedHashMap<>();
    casByUser.put("user1", asList(jcasA));
    casByUser.put("user2", asList(jcasB));
    casByUser.put(CURATION_USER, asList(jcasA));
    List<String> entryTypes = asList(DiffUtils.HOST_TYPE);
    SpanDiffAdapter adapter = new SpanDiffAdapter(DiffUtils.HOST_TYPE);
    adapter.addLinkFeature("links", "role", "target");
    List<? extends DiffAdapter> diffAdapters = asList(adapter);
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    result.print(System.out);
    JCas mergeCas = MergeCas.reMergeCas(result, getSingleCasByUser(casByUser));
    Type hostType = mergeCas.getTypeSystem().getType(DiffUtils.HOST_TYPE);
    int numHost = CasUtil.select(mergeCas.getCas(), hostType).size();
    assertEquals(1, numHost);
    for (FeatureStructure host : CasUtil.select(mergeCas.getCas(), hostType)) {
        ArrayFS linkFss = (ArrayFS) WebAnnoCasUtil.getFeatureFS(host, "links");
        assertEquals(0, linkFss.toArray().length);
    }
}

Example 19 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class MergeCasTest method simpleSpanNoDiffMultiFeatureTest.

@Test
public void simpleSpanNoDiffMultiFeatureTest() throws Exception {
    TypeSystemDescription customeTypes = DiffUtils.createCustomTypeSystem(SPAN_TYPE, "webanno.custom.Opinion", asList("aspect", "opinion"), null);
    Map<String, List<JCas>> casByUser = DiffUtils.loadWebAnnoTSV(customeTypes, "mergecas/spanmultifeature/1sentenceNENoFeature.tsv", "mergecas/spanmultifeature/1sentenceNENoFeature.tsv");
    List<String> entryTypes = asList("webanno.custom.Opinion");
    SpanDiffAdapter spanAdapter = new SpanDiffAdapter("webanno.custom.Opinion", "aspect", "opinion");
    List<SpanDiffAdapter> diffAdapters = asList(spanAdapter);
    addRandomMergeCas(casByUser);
    DiffResult result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    JCas mergeCas = MergeCas.reMergeCas(result, getSingleCasByUser(casByUser));
    casByUser = new HashMap<>();
    JCas actual = DiffUtils.readWebAnnoTSV("mergecas/spanmultifeature/1sentenceNENoFeature.tsv", customeTypes);
    casByUser.put("actual", asList(actual));
    casByUser.put("merge", asList(mergeCas));
    result = CasDiff2.doDiff(entryTypes, diffAdapters, LinkCompareBehavior.LINK_TARGET_AS_LABEL, casByUser);
    assertEquals(0, result.getDifferingConfigurationSets().size());
    assertEquals(0, result.getIncompleteConfigurationSets().size());
}

Example 20 with SpanDiffAdapter

use of de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff2.SpanDiffAdapter in project webanno by webanno.

the class TwoPairedKappaTest method testTwoUserSameAnnotation.

@Test
public void testTwoUserSameAnnotation() throws Exception {
    Map<User, List<SourceDocument>> userDocs = new HashMap<>();
    userDocs.put(user1, asList(document));
    userDocs.put(user2, asList(document));
    Map<User, JCas> userCases = new HashMap<>();
    userCases.put(user1, kappatestCas.getJCas());
    userCases.put(user2, kappatestCas.getJCas());
    Map<SourceDocument, Map<User, JCas>> documentJCases = new HashMap<>();
    documentJCases.put(document, userCases);
    // Check against new impl
    DiffResult diff = CasDiff2.doDiff(POS.class, new SpanDiffAdapter(POS.class, "PosValue"), LinkCompareBehavior.LINK_TARGET_AS_LABEL, convert(userCases));
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(diff, POS.class.getName(), "PosValue", convert(userCases));
    // Asserts
    System.out.printf("Agreement: %s%n", agreement.toString());
    diff.print(System.out);
    assertEquals(1.0d, agreement.getAgreement(), 0.000001);
    assertEquals(9, diff.size());
    assertEquals(0, diff.getDifferingConfigurationSets().size());
    assertEquals(0, diff.getIncompleteConfigurationSets().size());
}