use of de.tudarmstadt.ukp.clarin.webanno.model.Mode.ANNOTATION in project webanno by webanno.
the class AnnotationPreferencesDialogContent method loadModel.
private Preferences loadModel(AnnotatorState state) {
AnnotationPreference prefs = state.getPreferences();
// Import current settings from the annotator
Preferences model = new Preferences();
model.windowSize = Math.max(prefs.getWindowSize(), 1);
model.sidebarSize = prefs.getSidebarSize();
model.fontZoom = prefs.getFontZoom();
model.scrollPage = prefs.isScrollPage();
model.colorPerLayer = prefs.getColorPerLayer();
model.readonlyLayerColoringBehaviour = prefs.getReadonlyLayerColoringBehaviour();
model.rememberLayer = prefs.isRememberLayer();
model.collapseArcs = prefs.isCollapseArcs();
AnnotationEditorFactory editorFactory = annotationEditorRegistry.getEditorFactory(state.getPreferences().getEditor());
if (editorFactory == null) {
editorFactory = annotationEditorRegistry.getDefaultEditorFactory();
}
model.editor = Pair.of(editorFactory.getBeanName(), editorFactory.getDisplayName());
model.annotationLayers = annotationService.listAnnotationLayer(state.getProject()).stream().filter(layer -> layer.isEnabled()).filter(layer -> !Token.class.getName().equals(layer.getName())).filter(layer -> !(layer.getType().equals(CHAIN_TYPE) && (state.getMode().equals(CORRECTION) || // disable coreference annotation for correction/curation pages
state.getMode().equals(CURATION)))).collect(Collectors.toList());
return model;
}
use of de.tudarmstadt.ukp.clarin.webanno.model.Mode.ANNOTATION in project webanno by webanno.
the class AnnotationDocumentExporter method exportAnnotationDocumentContents.
private void exportAnnotationDocumentContents(ProjectExportRequest aRequest, ProjectExportTaskMonitor aMonitor, ExportedProject aExProject, File aStage) throws UIMAException, ClassNotFoundException, IOException {
Project project = aRequest.getProject();
// The export process may store project-related information in this context to ensure it
// is looked up only once during the bulk operation and the DB is not hit too often.
Map<Pair<Project, String>, Object> bulkOperationContext = new HashMap<>();
List<SourceDocument> documents = documentService.listSourceDocuments(project);
int i = 1;
int initProgress = aMonitor.getProgress();
// Create a map containing the annotation documents for each source document. Doing this
// as one DB access before the main processing to avoid hammering the DB in the loops
// below.
Map<SourceDocument, List<AnnotationDocument>> srcToAnnIdx = documentService.listAnnotationDocuments(project).stream().collect(groupingBy(doc -> doc.getDocument(), toList()));
// Cache user lookups to avoid constantly hitting the database
LoadingCache<String, User> usersCache = Caffeine.newBuilder().build(key -> userRepository.get(key));
for (SourceDocument srcDoc : documents) {
try (CasStorageSession session = CasStorageSession.openNested()) {
// If the initial CAS does not exist yet, it must be created before export.
if (!documentService.existsInitialCas(srcDoc)) {
documentService.createOrReadInitialCas(srcDoc);
}
File targetDir = new File(aStage, ANNOTATION_CAS_FOLDER + srcDoc.getName());
forceMkdir(targetDir);
File initialCasFile = documentService.getCasFile(srcDoc, INITIAL_CAS_PSEUDO_USER);
copyFileToDirectory(initialCasFile, targetDir);
log.info("Exported annotation document content for user [" + INITIAL_CAS_PSEUDO_USER + "] for source document [" + srcDoc.getId() + "] in project [" + project.getName() + "] with id [" + project.getId() + "]");
//
// Export per-user annotation document
//
// Determine which format to use for export
String formatId = FORMAT_AUTO.equals(aRequest.getFormat()) ? srcDoc.getFormat() : aRequest.getFormat();
FormatSupport format = importExportService.getWritableFormatById(formatId).orElseGet(() -> {
FormatSupport fallbackFormat = new WebAnnoTsv3FormatSupport();
aMonitor.addMessage(LogMessage.warn(this, "Annotation: [%s] No writer " + "found for original format [%s] - exporting as [%s] " + "instead.", srcDoc.getName(), formatId, fallbackFormat.getName()));
return fallbackFormat;
});
// Export annotations from regular users
for (AnnotationDocument annDoc : srcToAnnIdx.computeIfAbsent(srcDoc, key -> emptyList())) {
// annotation document is not NEW/IGNORE
if (usersCache.get(annDoc.getUser()) != null && !annDoc.getState().equals(AnnotationDocumentState.NEW) && !annDoc.getState().equals(AnnotationDocumentState.IGNORE)) {
File annSerDir = new File(aStage.getAbsolutePath() + ANNOTATION_CAS_FOLDER + srcDoc.getName());
File annDocDir = new File(aStage.getAbsolutePath() + ANNOTATION_ORIGINAL_FOLDER + srcDoc.getName());
forceMkdir(annSerDir);
forceMkdir(annDocDir);
File annSerFile = documentService.getCasFile(srcDoc, annDoc.getUser());
File annFile = null;
if (annSerFile.exists()) {
annFile = importExportService.exportAnnotationDocument(srcDoc, annDoc.getUser(), format, annDoc.getUser(), ANNOTATION, false, bulkOperationContext);
}
if (annSerFile.exists()) {
copyFileToDirectory(annSerFile, annSerDir);
copyFileToDirectory(annFile, annDocDir);
forceDelete(annFile);
}
log.info("Exported annotation document content for user [" + annDoc.getUser() + "] for source document [" + srcDoc.getId() + "] in project [" + project.getName() + "] with id [" + project.getId() + "]");
}
}
// correction type projects.
if (PROJECT_TYPE_AUTOMATION.equals(project.getMode()) || PROJECT_TYPE_CORRECTION.equals(project.getMode())) {
File corrSerFile = documentService.getCasFile(srcDoc, CORRECTION_USER);
if (corrSerFile.exists()) {
// Copy CAS - this is used when importing the project again
// Util WebAnno 3.4.x, the CORRECTION_USER CAS was exported to 'curation'
// and 'curation_ser'.
// Since WebAnno 3.5.x, the CORRECTION_USER CAS is exported to 'annotation'
// and 'annotation_ser'.
File curationSerDir = new File(aStage + ANNOTATION_AS_SERIALISED_CAS + srcDoc.getName());
forceMkdir(curationSerDir);
copyFileToDirectory(corrSerFile, curationSerDir);
// Copy secondary export format for convenience - not used during import
File curationDir = new File(aStage + ANNOTATION_ORIGINAL_FOLDER + srcDoc.getName());
forceMkdir(curationDir);
File corrFile = importExportService.exportAnnotationDocument(srcDoc, CORRECTION_USER, format, CORRECTION_USER, CORRECTION);
copyFileToDirectory(corrFile, curationDir);
forceDelete(corrFile);
}
}
}
aMonitor.setProgress(initProgress + (int) ceil(((double) i) / documents.size() * 80.0));
i++;
}
}
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