Examples with OperatorType dr.app.beauti.types.OperatorType used on opensource projects

Example 1 with OperatorType

use of dr.app.beauti.types.OperatorType in project beast-mcmc by beast-dev.

the class TipDateSamplingComponentOptions method selectOperators.

public void selectOperators(final ModelOptions modelOptions, final List<Operator> ops) {
    if (tipDateSamplingType == TipDateSamplingType.SAMPLE_INDIVIDUALLY || tipDateSamplingType == TipDateSamplingType.SAMPLE_PRECISION) {
        TaxonList taxa = getTaxonSet();
        String description = "Random walk for the age of this tip";
        // OperatorType type = OperatorType.RANDOM_WALK_ABSORBING;
        OperatorType type = OperatorType.UNIFORM;
        if (tipDateSamplingType == TipDateSamplingType.SAMPLE_PRECISION) {
            description = "Uniform sample from precision of age of this tip";
        // type = OperatorType.UNIFORM;
        }
        for (int i = 0; i < taxa.getTaxonCount(); i++) {
            Taxon taxon = taxa.getTaxon(i);
            Operator operator = tipDateOperators.get(taxon);
            if (operator == null) {
                Parameter parameter = getTipDateParameter(taxon);
                // operator = new Operator("age(" + taxon.getId() + ")", "", parameter, OperatorType.SCALE, 0.75, 1.0);
                operator = new Operator.Builder("age(" + taxon.getId() + ")", description, parameter, type, 1.0, 1.0).build();
                if (tipDateSamplingType == TipDateSamplingType.SAMPLE_INDIVIDUALLY) {
                    operator.setWeight(2.0);
                }
                tipDateOperators.put(taxon, operator);
            }
            ops.add(operator);
        }
    } else if (tipDateSamplingType == TipDateSamplingType.SAMPLE_JOINT) {
        ops.add(modelOptions.getOperator("treeModel.tipDates"));
    }
}