Examples with ARGModel dr.evomodel.arg.ARGModel used on opensource projects

Example 1 with ARGModel

use of dr.evomodel.arg.ARGModel in project beast-mcmc by beast-dev.

the class ARGAddRemoveOperatorTest method setUp.

public void setUp() throws Exception {
    super.setUp();
    NewickImporter importer = new NewickImporter("(((A:1.0,B:1.0):1.0,C:2.0):1.0,D:3.0);");
    arg4 = new ARGModel(importer.importTree(null));
    arg4.setupHeightBounds();
    arg4.addLikelihoodCalculator(null);
    arg4.addLikelihoodCalculator(null);
    importer = new NewickImporter("((((A:1.0,B:1.0):1.0,C:2.0):1.0,D:3.0):1.0, E:4.0);");
    ARGModel arg5 = new ARGModel(importer.importTree(null));
    importer = new NewickImporter("(((((A:1.0,B:1.0):1.0,C:2.0):1.0,D:3.0):1.0, E:4.0),F:5.0);");
    ARGModel arg6 = new ARGModel(importer.importTree(null));
}