Examples with ExternalInternalBranchModel dr.evomodel.branchmodel.ExternalInternalBranchModel used on opensource projects

Example 1 with ExternalInternalBranchModel

use of dr.evomodel.branchmodel.ExternalInternalBranchModel in project beast-mcmc by beast-dev.

the class ExternalInternalBranchModelParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    Logger.getLogger("dr.evomodel").info("\nUsing external-internal branch model.");
    TreeModel tree = (TreeModel) xo.getChild(TreeModel.class);
    SubstitutionModel internalSubstitutionModel = (SubstitutionModel) xo.getChild(SubstitutionModel.class);
    SubstitutionModel externalSubstitutionModel = (SubstitutionModel) xo.getElementFirstChild(EXTERNAL_BRANCHES);
    return new ExternalInternalBranchModel(tree, externalSubstitutionModel, internalSubstitutionModel);
}