Examples with RandomBranchAssignmentModel dr.evomodel.branchmodel.RandomBranchAssignmentModel used on opensource projects

Example 1 with RandomBranchAssignmentModel

use of dr.evomodel.branchmodel.RandomBranchAssignmentModel in project beast-mcmc by beast-dev.

the class RandomBranchAssignmentModelParser method parseXMLObject.

@Override
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    Logger.getLogger("dr.evomodel").info("\nUsing random assignment branch model.");
    TreeModel treeModel = (TreeModel) xo.getChild(TreeModel.class);
    XMLObject cxo = xo.getChild(MODELS);
    List<SubstitutionModel> substitutionModels = new ArrayList<SubstitutionModel>();
    for (int i = 0; i < cxo.getChildCount(); i++) {
        SubstitutionModel substModel = (SubstitutionModel) cxo.getChild(i);
        substitutionModels.add(substModel);
    }
    return new RandomBranchAssignmentModel(treeModel, substitutionModels);
}