Examples with GMRFPopSizeStatistic dr.evomodel.coalescent.GMRFPopSizeStatistic used on opensource projects

Example 1 with GMRFPopSizeStatistic

use of dr.evomodel.coalescent.GMRFPopSizeStatistic in project beast-mcmc by beast-dev.

the class GMRFPopSizeStatisticParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    double[] times;
    if (xo.hasAttribute(FROM)) {
        double from = xo.getDoubleAttribute(FROM);
        double to = xo.getDoubleAttribute(TO);
        int number = xo.getIntegerAttribute(NUMBER_OF_INTERVALS);
        double length = (to - from) / number;
        times = new double[number + 1];
        for (int i = 0; i < times.length; i++) {
            times[i] = from + i * length;
        }
    } else {
        times = xo.getDoubleArrayAttribute(TIMES);
    }
    GMRFSkyrideLikelihood gsl = (GMRFSkyrideLikelihood) xo.getChild(GMRFSkyrideLikelihood.class);
    return new GMRFPopSizeStatistic(times, gsl);
}