Examples with HiddenLinkageLogger dr.evomodel.tree.HiddenLinkageLogger used on opensource projects

Example 1 with HiddenLinkageLogger

use of dr.evomodel.tree.HiddenLinkageLogger in project beast-mcmc by beast-dev.

the class HiddenLinkageLoggerParser method parseXMLObject.

/**
     * @return an object based on the XML element it was passed.
     */
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    HiddenLinkageModel hlm = (HiddenLinkageModel) xo.getChild(HiddenLinkageModel.class);
    // logEvery of zero only displays at the end
    final int logEvery = xo.getAttribute(LOG_EVERY, 0);
    final PrintWriter pw = getLogFile(xo, getParserName());
    final LogFormatter formatter = new TabDelimitedFormatter(pw);
    return new HiddenLinkageLogger(hlm, formatter, logEvery);
}