Examples with HiddenLinkageTreeLogger dr.evomodel.tree.HiddenLinkageTreeLogger used on opensource projects

Example 1 with HiddenLinkageTreeLogger

use of dr.evomodel.tree.HiddenLinkageTreeLogger in project beast-mcmc by beast-dev.

the class HiddenLinkageTreeLoggerParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    parseXMLParameters(xo);
    HiddenLinkageModel hlm = (HiddenLinkageModel) xo.getChild(HiddenLinkageModel.class);
    HiddenLinkageTreeLogger logger = new HiddenLinkageTreeLogger(hlm, tree, branchRates, treeAttributeProviders, treeTraitProviders, formatter, logEvery, nexusFormat, sortTranslationTable, mapNames, format, condition);
    if (title != null) {
        logger.setTitle(title);
    }
    return logger;
}