Examples with TaxonParser dr.evoxml.TaxonParser used on opensource projects

Example 1 with TaxonParser

use of dr.evoxml.TaxonParser in project beast-mcmc by beast-dev.

the class GreatCircleDistances method main.

public static void main(String[] args) throws ParserConfigurationException, IOException, SAXException, XMLParseException {
    XMLParser parser = new XMLParser(true, true);
    parser.addXMLObjectParser(new TaxonParser());
    parser.addXMLObjectParser(new TaxaParser());
    parser.addXMLObjectParser(new AttributeParser());
    parser.addXMLObjectParser(new DateParser());
    parser.parse(new FileReader(new File(args[0])), true);
    Taxa taxa = (Taxa) parser.getRoot().getChild(0);
    System.out.println("Found " + taxa.getTaxonCount() + " taxa");
    GreatCircleDistances distances = new GreatCircleDistances(taxa, "location");
    Statistic statistic = distances.getDistanceStatistic(true);
    for (int i = 0; i < statistic.getDimension(); i++) {
        System.out.println(statistic.getStatisticValue(i));
    }
}