Examples with LatentFactorHamiltonianMC dr.inference.operators.hmc.deprecated.LatentFactorHamiltonianMC used on opensource projects

Example 1 with LatentFactorHamiltonianMC

use of dr.inference.operators.hmc.deprecated.LatentFactorHamiltonianMC in project beast-mcmc by beast-dev.

the class LatentFactorHamiltonianMCParser method parseXMLObject.

@Override
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    LatentFactorModel lfm = (LatentFactorModel) xo.getChild(LatentFactorModel.class);
    FullyConjugateMultivariateTraitLikelihood tree = (FullyConjugateMultivariateTraitLikelihood) xo.getChild(FullyConjugateMultivariateTraitLikelihood.class);
    double weight = xo.getDoubleAttribute(WEIGHT);
    CoercionMode mode = CoercionMode.parseMode(xo);
    int nSteps = xo.getIntegerAttribute(N_STEPS);
    double stepSize = xo.getDoubleAttribute(STEP_SIZE);
    double momentumSd = xo.getDoubleAttribute(MOMENTUM_SD);
    return new LatentFactorHamiltonianMC(lfm, tree, weight, mode, stepSize, nSteps, momentumSd);
}