Examples with Pcd edu.cmu.tetrad.algcomparison.algorithm.oracle.pattern.Pcd used on opensource projects

Example 1 with Pcd

use of edu.cmu.tetrad.algcomparison.algorithm.oracle.pattern.Pcd in project tetrad by cmu-phil.

the class TestKunMeasurementError method TestCycles_Data_fMRI_FASK.

public void TestCycles_Data_fMRI_FASK() {
    Parameters parameters = new Parameters();
    parameters.set("numRuns", 20);
    parameters.set("penaltyDiscount", 1);
    parameters.set("depth", -1);
    parameters.set("determinismThreshold", .1);
    parameters.set("verbose", true);
    parameters.set("symmetricFirstStep", false);
    parameters.set("faithfulnessAssumed", false);
    parameters.set("maxDegree", 100);
    Statistics statistics = new Statistics();
    // statistics.add(new ParameterColumn("determinismThreshold"));
    statistics.add(new AdjacencyPrecision());
    statistics.add(new AdjacencyRecall());
    statistics.add(new ArrowheadPrecision());
    statistics.add(new ArrowheadRecall());
    Simulations simulations = new Simulations();
    // String dir = "/Users/user/Downloads/Simul1_T500";
    String dir = "/Users/user/Downloads/Simul1_T2000";
    // String dir = "/Users/user/Downloads/Simul2_T500";
    // String dir = "/Users/user/Downloads/Simul2_T2000";
    simulations.add(new LoadContinuousDataAndSingleGraphKun(dir, "Cov_X"));
    simulations.add(new LoadContinuousDataAndSingleGraphKun(dir, "Cov_tilde"));
    simulations.add(new LoadContinuousDataAndSingleGraphKun(dir, "Cov_tilde_hat"));
    // 
    Algorithms algorithms = new Algorithms();
    IndependenceWrapper test = new SemBicTest();
    ScoreWrapper score = new SemBicScore();
    algorithms.add(new Pc(test));
    algorithms.add(new Fges(score));
    algorithms.add(new Pcd());
    algorithms.add(new FgesD());
    Comparison comparison = new Comparison();
    comparison.setShowAlgorithmIndices(true);
    comparison.setShowSimulationIndices(true);
    comparison.setSortByUtility(false);
    comparison.setShowUtilities(false);
    comparison.setParallelized(false);
    comparison.setSaveGraphs(false);
    comparison.setTabDelimitedTables(false);
    comparison.compareFromSimulations("comparison", simulations, algorithms, statistics, parameters);
}