Examples with Knowledge2 edu.cmu.tetrad.data.Knowledge2 used on opensource projects

Example 61 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class LingRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules rules = new MeekRules();
    rules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return rules;
}

Example 62 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class LingamRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules rules = new MeekRules();
    rules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return rules;
}

Example 63 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class TsFciRunner2 method execute.

// =================PUBLIC METHODS OVERRIDING ABSTRACT=================//
/**
 * Executes the algorithm, producing (at least) a result workbench. Must be
 * implemented in the extending class.
 */
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    Parameters searchParams = getParams();
    Parameters params = searchParams;
    Graph graph;
    IndependenceTest independenceTest = getIndependenceTest();
    Score score = new ScoredIndTest(independenceTest);
    if (independenceTest instanceof IndTestDSep) {
        final DagToPag dagToPag = new DagToPag(((IndTestDSep) independenceTest).getGraph());
        dagToPag.setCompleteRuleSetUsed(params.getBoolean("completeRuleSetUsed", false));
        graph = dagToPag.convert();
    } else {
        GFci fci = new GFci(independenceTest, score);
        fci.setKnowledge(knowledge);
        fci.setCompleteRuleSetUsed(params.getBoolean("completeRuleSetUsed", false));
        fci.setMaxPathLength(params.getInt("maxReachablePathLength", -1));
        fci.setMaxDegree(params.getInt("maxIndegree"));
        fci.setCompleteRuleSetUsed(false);
        fci.setFaithfulnessAssumed(params.getBoolean("faithfulnessAssumed", true));
        graph = fci.search();
    }
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
}

Example 64 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class SampleVcpcFastRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    Parameters searchParams = getParams();
    Parameters params = searchParams;
    SampleVcpcFast sfvcpc = new SampleVcpcFast(getIndependenceTest());
    sfvcpc.setKnowledge(knowledge);
    sfvcpc.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    sfvcpc.setDepth(params.getInt("depth", -1));
    if (independenceFactsModel != null) {
        sfvcpc.setFacts(independenceFactsModel.getFacts());
    }
    // vcpc.setSemPm(semPm);
    // 
    // if (semPm != null) {
    // vcpc.setSemPm(getSemPm());
    // }
    sfvcpc.setSemIm(semIm);
    // if (semIm != null) {
    // vcpc.setSemIm(getEstIm());
    // }
    Graph graph = sfvcpc.search();
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
    setSfvcpcFields(sfvcpc);
}

Example 65 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class SampleVcpcFastRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules meekRules = new MeekRules();
    meekRules.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    meekRules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return meekRules;
}