Examples with Knowledge2 edu.cmu.tetrad.data.Knowledge2 used on opensource projects

Example 66 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class PcRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules rules = new MeekRules();
    rules.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    rules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return rules;
}

Example 67 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class PcdRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    Parameters searchParams = getParams();
    Parameters params = searchParams;
    Pcd pc = new Pcd(getIndependenceTest());
    pc.setKnowledge(knowledge);
    pc.setDepth(params.getInt("depth", -1));
    Graph graph;
    try {
        graph = pc.search();
    } catch (UnsupportedOperationException e) {
        e.printStackTrace();
        JOptionPane.showMessageDialog(JOptionUtils.centeringComp(), "There was an error, probably because the " + "independence test doesn't support determinististic checks.");
        return;
    }
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
}

Example 68 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class SampleVcpcRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules meekRules = new MeekRules();
    meekRules.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    meekRules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return meekRules;
}

Example 69 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class MbfsPatternRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    Mbfs search = new Mbfs(getIndependenceTest(), -1);
    search.setDepth(getParams().getInt("depth", -1));
    // search.setTrueGraph(trueGraph);
    Graph graph = search.search();
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
}

Example 70 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class PcLocalRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    IndependenceTest independenceTest = getIndependenceTest();
    Parameters testParams = getParams();
    PcLocal search = new PcLocal(independenceTest);
    search.setAggressivelyPreventCycles(isAggressivelyPreventCycles());
    search.setKnowledge(knowledge);
    Graph graph = search.search();
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
}