Examples with Knowledge2 edu.cmu.tetrad.data.Knowledge2 used on opensource projects

Example 31 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class MbfsPatternRunner method getMeekRules.

public ImpliedOrientation getMeekRules() {
    MeekRules rules = new MeekRules();
    rules.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    rules.setKnowledge((IKnowledge) getParams().get("knowledge", new Knowledge2()));
    return rules;
}

Example 32 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class SampleVcpcRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    Parameters searchParams = getParams();
    Parameters params = searchParams;
    SampleVcpc svcpc = new SampleVcpc(getIndependenceTest());
    svcpc.setKnowledge(knowledge);
    svcpc.setAggressivelyPreventCycles(this.isAggressivelyPreventCycles());
    svcpc.setDepth(params.getInt("depth", -1));
    if (independenceFactsModel != null) {
        svcpc.setFacts(independenceFactsModel.getFacts());
    }
    // vcpc.setSemPm(semPm);
    // 
    // if (semPm != null) {
    // vcpc.setSemPm(getSemPm());
    // }
    svcpc.setSemIm(semIm);
    if (semIm != null) {
        svcpc.setSemIm(this.semIm);
    }
    Graph graph = svcpc.search();
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
    setSvcpcFields(svcpc);
}

Example 33 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class DataAlgorithmRunner method execute.

// ===================PUBLIC METHODS OVERRIDING ABSTRACT================//
public void execute() {
    IKnowledge knowledge = (IKnowledge) getParams().get("knowledge", new Knowledge2());
    int depth = getParams().getInt("depth", -1);
    Graph graph;
    Pc pc = new Pc(getIndependenceTest());
    pc.setKnowledge(knowledge);
    pc.setAggressivelyPreventCycles(isAggressivelyPreventCycles());
    pc.setDepth(depth);
    pc.setInitialGraph(initialGraph);
    graph = pc.search();
    System.out.println(graph);
    if (getSourceGraph() != null) {
        GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
    } else if (knowledge.isDefaultToKnowledgeLayout()) {
        SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
    } else {
        GraphUtils.circleLayout(graph, 200, 200, 150);
    }
    setResultGraph(graph);
    setPcFields(pc);
}

Example 34 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class LofsSearchEditor method layoutByKnowledge.

public void layoutByKnowledge() {
    GraphWorkbench resultWorkbench = getWorkbench();
    Graph graph = resultWorkbench.getGraph();
    IKnowledge knowledge = (IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2());
    SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
// resultWorkbench.setGraph(graph);
}

Example 35 with Knowledge2

use of edu.cmu.tetrad.data.Knowledge2 in project tetrad by cmu-phil.

the class LofsSearchEditorNew method layoutByKnowledge.

public void layoutByKnowledge() {
    GraphWorkbench resultWorkbench = getWorkbench();
    Graph graph = resultWorkbench.getGraph();
    IKnowledge knowledge = (IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2());
    SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
// resultWorkbench.setGraph(graph);
}