Examples with GraphWrapper edu.cmu.tetradapp.model.GraphWrapper used on opensource projects

Example 1 with GraphWrapper

use of edu.cmu.tetradapp.model.GraphWrapper in project tetrad by cmu-phil.

the class MisclassificationsEditor method setup.

private void setup() {
    java.util.List<Graph> referenceGraphs = comparison.getReferenceGraphs();
    JTabbedPane pane = new JTabbedPane(JTabbedPane.LEFT);
    for (int i = 0; i < referenceGraphs.size(); i++) {
        JTabbedPane pane2 = new JTabbedPane(JTabbedPane.TOP);
        String compareString = comparison.getComparisonString(i);
        JPanel panel = new JPanel();
        Font font = new Font("Monospaced", Font.PLAIN, 14);
        final JTextArea textPane = new JTextArea();
        textPane.setText(compareString);
        textPane.setFont(font);
        JScrollPane scroll = new JScrollPane(textPane);
        scroll.setPreferredSize(new Dimension(400, 400));
        panel.add(Box.createVerticalStrut(10));
        Box box = Box.createHorizontalBox();
        panel.add(box);
        panel.add(Box.createVerticalStrut(10));
        Box box1 = Box.createHorizontalBox();
        box1.add(new JLabel("Graph Comparison: "));
        box1.add(Box.createHorizontalGlue());
        add(box1);
        setLayout(new BorderLayout());
        pane2.add("Comparison", scroll);
        pane2.add("Target Graph", new GraphEditor(new GraphWrapper(comparison.getTargetGraphs().get(i))).getWorkbench());
        pane2.add("True Graph", new GraphEditor(new GraphWrapper(comparison.getReferenceGraphs().get(i))).getWorkbench());
        pane.add("" + (i + 1), pane2);
    }
    add(pane);
}

Example 2 with GraphWrapper

use of edu.cmu.tetradapp.model.GraphWrapper in project tetrad by cmu-phil.

the class PcSearchParamEditor method setup.

public void setup() {
    /*
      The variable names from the object being searched over (usually data).
     */
    List<String> varNames = (List<String>) params.get("varNames", null);
    DataModel dataModel1 = null;
    Graph graph = null;
    for (Object parentModel1 : this.parentModels) {
        if (parentModel1 instanceof DataWrapper) {
            DataWrapper dataWrapper = (DataWrapper) parentModel1;
            dataModel1 = dataWrapper.getSelectedDataModel();
        }
        if (parentModel1 instanceof GraphWrapper) {
            GraphWrapper graphWrapper = (GraphWrapper) parentModel1;
            graph = graphWrapper.getGraph();
        }
        if (parentModel1 instanceof DagWrapper) {
            DagWrapper dagWrapper = (DagWrapper) parentModel1;
            graph = dagWrapper.getDag();
        }
        if (parentModel1 instanceof SemGraphWrapper) {
            SemGraphWrapper semGraphWrapper = (SemGraphWrapper) parentModel1;
            graph = semGraphWrapper.getGraph();
        }
    }
    if (dataModel1 != null) {
        varNames = new ArrayList<>(dataModel1.getVariableNames());
    } else if (graph != null) {
        Iterator<Node> it = graph.getNodes().iterator();
        varNames = new ArrayList();
        Node temp;
        while (it.hasNext()) {
            temp = it.next();
            if (temp.getNodeType() == NodeType.MEASURED) {
                varNames.add(temp.getName());
            }
        }
    } else {
        throw new NullPointerException("Null model (no graph or data model " + "passed to the search).");
    }
    this.params.set("varNames", varNames);
    IntTextField depthField = new IntTextField(this.params.getInt("depth", -1), 4);
    depthField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                PcSearchParamEditor.this.params.set("depth", value);
                Preferences.userRoot().putInt("depth", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    double alpha = params.getDouble("alpha", 0.001);
    if (!Double.isNaN(alpha)) {
        alphaField = new DoubleTextField(alpha, 4, NumberFormatUtil.getInstance().getNumberFormat());
        alphaField.setFilter(new DoubleTextField.Filter() {

            public double filter(double value, double oldValue) {
                try {
                    PcSearchParamEditor.this.params.set("alpha", 0.001);
                    Preferences.userRoot().putDouble("alpha", value);
                    return value;
                } catch (Exception e) {
                    return oldValue;
                }
            }
        });
    }
    setBorder(new MatteBorder(10, 10, 10, 10, super.getBackground()));
    setLayout(new BoxLayout(this, BoxLayout.Y_AXIS));
    if (!Double.isNaN(alpha)) {
        Box b2 = Box.createHorizontalBox();
        b2.add(new JLabel("Alpha Value:"));
        b2.add(Box.createGlue());
        b2.add(alphaField);
        add(b2);
        add(Box.createVerticalStrut(10));
    }
    Box b3 = Box.createHorizontalBox();
    b3.add(new JLabel("Search Depth:"));
    b3.add(Box.createGlue());
    b3.add(depthField);
    add(b3);
    add(Box.createVerticalStrut(10));
}

Example 3 with GraphWrapper

use of edu.cmu.tetradapp.model.GraphWrapper in project tetrad by cmu-phil.

the class FciSearchParamEditor method setup.

public void setup() {
    /*
      The variable names from the object being searched over (usually data).
     */
    List varNames = (List<String>) params.get("varNames", null);
    DataModel dataModel1 = null;
    Graph graph = null;
    for (Object parentModel1 : parentModels) {
        if (parentModel1 instanceof DataWrapper) {
            DataWrapper dataWrapper = (DataWrapper) parentModel1;
            dataModel1 = dataWrapper.getSelectedDataModel();
        }
        if (parentModel1 instanceof GraphWrapper) {
            GraphWrapper graphWrapper = (GraphWrapper) parentModel1;
            graph = graphWrapper.getGraph();
        }
        if (parentModel1 instanceof DagWrapper) {
            DagWrapper dagWrapper = (DagWrapper) parentModel1;
            graph = dagWrapper.getDag();
        }
        if (parentModel1 instanceof SemGraphWrapper) {
            SemGraphWrapper semGraphWrapper = (SemGraphWrapper) parentModel1;
            graph = semGraphWrapper.getGraph();
        }
    }
    if (dataModel1 != null) {
        varNames = new ArrayList(dataModel1.getVariableNames());
    } else if (graph != null) {
        Iterator<Node> it = graph.getNodes().iterator();
        varNames = new ArrayList();
        Node temp;
        while (it.hasNext()) {
            temp = it.next();
            if (temp.getNodeType() == NodeType.MEASURED) {
                varNames.add(temp.getName());
            }
        }
    } else {
        throw new NullPointerException("Null model (no graph or data model " + "passed to the search).");
    }
    params.set("varNames", varNames);
    IntTextField depthField = new IntTextField(params.getInt("depth", -1), 4);
    depthField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                params.set("depth", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    double alpha = params.getDouble("alpha", 0.001);
    if (!Double.isNaN(alpha)) {
        alphaField = new DoubleTextField(alpha, 4, NumberFormatUtil.getInstance().getNumberFormat());
        alphaField.setFilter(new DoubleTextField.Filter() {

            public double filter(double value, double oldValue) {
                try {
                    params.set("alpha", 0.001);
                    Preferences.userRoot().putDouble("alpha", value);
                    return value;
                } catch (Exception e) {
                    return oldValue;
                }
            }
        });
    }
    setBorder(new MatteBorder(10, 10, 10, 10, super.getBackground()));
    setLayout(new BoxLayout(this, BoxLayout.Y_AXIS));
    Box b1 = Box.createHorizontalBox();
    b1.add(new JLabel("Knowledge:"));
    b1.add(Box.createGlue());
    add(b1);
    add(Box.createVerticalStrut(10));
    if (!Double.isNaN(alpha)) {
        Box b2 = Box.createHorizontalBox();
        b2.add(new JLabel("Alpha Value:"));
        b2.add(Box.createGlue());
        b2.add(alphaField);
        add(b2);
        add(Box.createVerticalStrut(10));
    }
    Box b3 = Box.createHorizontalBox();
    b3.add(new JLabel("Search Depth:"));
    b3.add(Box.createGlue());
    b3.add(depthField);
    add(b3);
    add(Box.createVerticalStrut(10));
}

Example 4 with GraphWrapper

use of edu.cmu.tetradapp.model.GraphWrapper in project tetrad by cmu-phil.

the class EdgewiseComparisonEditor method setup.

// ============================ Private Methods =========================//
private void setup() {
    java.util.List<Graph> referenceGraphs = comparison.getReferenceGraphs();
    JTabbedPane pane = new JTabbedPane(JTabbedPane.LEFT);
    for (int i = 0; i < referenceGraphs.size(); i++) {
        JTabbedPane pane2 = new JTabbedPane(JTabbedPane.TOP);
        String compareString = comparison.getComparisonString(i);
        JPanel panel = new JPanel();
        Font font = new Font("Monospaced", Font.PLAIN, 14);
        final JTextArea textPane = new JTextArea();
        textPane.setText(compareString);
        textPane.setFont(font);
        JScrollPane scroll = new JScrollPane(textPane);
        scroll.setPreferredSize(new Dimension(400, 400));
        panel.add(Box.createVerticalStrut(10));
        Box box = Box.createHorizontalBox();
        panel.add(box);
        panel.add(Box.createVerticalStrut(10));
        Box box1 = Box.createHorizontalBox();
        box1.add(new JLabel("Graph Comparison: "));
        box1.add(Box.createHorizontalGlue());
        add(box1);
        setLayout(new BorderLayout());
        pane2.add("Comparison", scroll);
        pane2.add("Target Graph", new GraphEditor(new GraphWrapper(comparison.getTargetGraphs().get(i))).getWorkbench());
        pane2.add("True Graph", new GraphEditor(new GraphWrapper(comparison.getReferenceGraphs().get(i))).getWorkbench());
        pane.add("" + (i + 1), pane2);
    }
    add(pane);
}

Example 5 with GraphWrapper

use of edu.cmu.tetradapp.model.GraphWrapper in project tetrad by cmu-phil.

the class LogisticRegressionParamsPanel method getVarsFromGraph.

private List<String> getVarsFromGraph(Object[] parentModels) {
    Object graphWrapper = null;
    for (Object parentModel : parentModels) {
        if (parentModel instanceof GraphWrapper) {
            graphWrapper = parentModel;
        } else if (parentModel instanceof DagWrapper) {
            graphWrapper = parentModel;
        }
    }
    if (graphWrapper == null) {
        return null;
    } else {
        Graph graph = null;
        if (graphWrapper instanceof GraphWrapper) {
            graph = ((GraphWrapper) graphWrapper).getGraph();
        } else if (graphWrapper instanceof DagWrapper) {
            graph = ((DagWrapper) graphWrapper).getDag();
        }
        List<Node> nodes = graph.getNodes();
        List<String> nodeNames = new LinkedList<>();
        for (Node node : nodes) {
            nodeNames.add(node.getName());
        }
        return nodeNames;
    }
}