Examples with IntTextField edu.cmu.tetradapp.util.IntTextField used on opensource projects

Example 16 with IntTextField

use of edu.cmu.tetradapp.util.IntTextField in project tetrad by cmu-phil.

the class FgesSearchEditor method calcStats.

private void calcStats() {
    FgesRunner runner = (FgesRunner) getAlgorithmRunner();
    if (runner.getTopGraphs().isEmpty()) {
        throw new IllegalArgumentException("No patterns were recorded. Please adjust the number of " + "patterns to store.");
    }
    Graph resultGraph = runner.getTopGraphs().get(runner.getIndex()).getGraph();
    if (!(getAlgorithmRunner().getDataModel() instanceof ICovarianceMatrix)) {
        // resultGraph may be the output of a PC search.
        // Such graphs sometimes contain doubly directed edges.
        // We converte such edges to directed edges here.
        // For the time being an orientation is arbitrarily selected.
        Set<Edge> allEdges = resultGraph.getEdges();
        for (Edge edge : allEdges) {
            if (edge.getEndpoint1() == Endpoint.ARROW && edge.getEndpoint2() == Endpoint.ARROW) {
                // Option 1 orient it from node1 to node2
                resultGraph.setEndpoint(edge.getNode1(), edge.getNode2(), Endpoint.ARROW);
                // Option 2 remove such edges:
                resultGraph.removeEdge(edge);
            }
        }
        Graph dag = SearchGraphUtils.dagFromPattern(resultGraph);
        // DataSet dataSet = (DataSet) getAlgorithmRunner().getDataModel();
        // String report;
        // 
        // if (dataSet.isContinuous()) {
        // report = reportIfContinuous(dag, dataSet);
        // } else if (dataSet.isDiscrete()) {
        // report = reportIfDiscrete(dag, dataSet);
        // } else {
        // throw new IllegalArgumentException("");
        // }
        String bayesFactorsReport = ((FgesRunner) getAlgorithmRunner()).getBayesFactorsReport(dag);
        // String bootstrapEdgeCountsReport = ((ImagesRunner) getAlgorithmRunner()).getBootstrapEdgeCountsReport(25);
        JScrollPane dagWorkbenchScroll = dagWorkbenchScroll(dag);
        // modelStatsText = new JTextArea();
        JTextArea logBayesFactorsScroll = new JTextArea();
        // bootstrapEdgeCountsScroll = new JTextArea();
        // modelStatsText.setLineWrap(true);
        // modelStatsText.setWrapStyleWord(true);
        // modelStatsText.setText(report);
        logBayesFactorsScroll.setLineWrap(true);
        logBayesFactorsScroll.setWrapStyleWord(true);
        logBayesFactorsScroll.setText(bayesFactorsReport);
        // bootstrapEdgeCountsScroll.setLineWrap(true);
        // bootstrapEdgeCountsScroll.setWrapStyleWord(true);
        // bootstrapEdgeCountsScroll.setText(bootstrapEdgeCountsReport);
        // JPanel bootstrapPanel = new JPanel();
        // bootstrapPanel.setLayout(new BorderLayout());
        // bootstrapPanel.add(bootstrapEdgeCountsScroll, BorderLayout.CENTER);
        JTextArea modelStatisticsScroll = new JTextArea();
        // bootstrapEdgeCountsScroll = new JTextArea();
        // modelStatsText.setLineWrap(true);
        // modelStatsText.setWrapStyleWord(true);
        // modelStatsText.setText(report);
        modelStatisticsScroll.setLineWrap(true);
        modelStatisticsScroll.setWrapStyleWord(true);
        modelStatisticsScroll.setText(reportIfDiscrete(dag, (DataSet) getDataModel()));
        Box b = Box.createHorizontalBox();
        b.add(new JLabel("# Bootstraps = "));
        final IntTextField numBootstraps = new IntTextField(25, 8);
        numBootstraps.setFilter(new IntTextField.Filter() {

            public int filter(int value, int oldValue) {
                if (value < 0)
                    return oldValue;
                else
                    return value;
            }
        });
        b.add(numBootstraps);
        JButton goButton = new JButton("Go!");
        goButton.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent actionEvent) {
                Window owner = (Window) getTopLevelAncestor();
                new WatchedProcess(owner) {

                    public void watch() {
                        int n = numBootstraps.getValue();
                    // String bootstrapEdgeCountsReport = ((ImagesRunner) getAlgorithmRunner()).getBootstrapEdgeCountsReport(n);
                    // bootstrapEdgeCountsScroll.setText(bootstrapEdgeCountsReport);
                    }
                };
            }
        });
        b.add(Box.createHorizontalGlue());
        b.add(goButton);
        // bootstrapPanel.add(b, BorderLayout.NORTH);
        removeStatsTabs();
        tabbedPane.addTab("DAG in pattern", dagWorkbenchScroll);
        // tabbedPane.addTab("DAG Model Statistics", new JScrollPane(modelStatsText));
        tabbedPane.addTab("Log Bayes Factors", new JScrollPane(logBayesFactorsScroll));
        // tabbedPane.addTab("Edge Bootstraps", new JScrollPane(bootstrapPanel));
        tabbedPane.addTab("Model Stats", new JScrollPane(modelStatisticsScroll));
    }
}

Example 17 with IntTextField

use of edu.cmu.tetradapp.util.IntTextField in project tetrad by cmu-phil.

the class GlassoSearchEditor method getIndTestParamBox.

private JComponent getIndTestParamBox() {
    final Parameters params = getAlgorithmRunner().getParams();
    IntTextField maxItField = new IntTextField((int) params.get("maxit", 10000), 6);
    maxItField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                params.set("maxit", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    DoubleTextField thrField = new DoubleTextField(params.getDouble("thr", 1e-4), 8, new DecimalFormat("0.0########"), new DecimalFormat("0.00E00"), 1e-4);
    thrField.setFilter(new DoubleTextField.Filter() {

        public double filter(double value, double oldValue) {
            try {
                params.set("thr", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    JCheckBox iaCheckBox = new JCheckBox("Meinhausen-Buhlman");
    iaCheckBox.setSelected(params.getBoolean("ia", false));
    iaCheckBox.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            JCheckBox checkBox = (JCheckBox) actionEvent.getSource();
            params.set("is", checkBox.isSelected());
        }
    });
    JCheckBox isCheckBox = new JCheckBox("Warm start");
    isCheckBox.setSelected(params.getBoolean("ia", false));
    isCheckBox.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            JCheckBox checkBox = (JCheckBox) actionEvent.getSource();
            params.set("is", checkBox.isSelected());
        }
    });
    JCheckBox itrCheckBox = new JCheckBox("Log trace");
    itrCheckBox.setSelected(params.getBoolean("ia", false));
    itrCheckBox.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            JCheckBox checkBox = (JCheckBox) actionEvent.getSource();
            params.set("itr", checkBox.isSelected());
        }
    });
    JCheckBox ipenCheckBox = new JCheckBox("Penalize diagonal");
    ipenCheckBox.setSelected(params.getBoolean("ipen", false));
    ipenCheckBox.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            JCheckBox checkBox = (JCheckBox) actionEvent.getSource();
            params.set("ipen", checkBox.isSelected());
        }
    });
    Box b = Box.createVerticalBox();
    Box b1 = Box.createHorizontalBox();
    b1.add(new JLabel("Max iterations"));
    b1.add(Box.createHorizontalGlue());
    b1.add(maxItField);
    b.add(b1);
    Box b2 = Box.createHorizontalBox();
    b2.add(new JLabel("Threshold"));
    b2.add(Box.createHorizontalGlue());
    b2.add(thrField);
    b.add(b2);
    Box b3 = Box.createHorizontalBox();
    b3.add(iaCheckBox);
    b3.add(Box.createHorizontalGlue());
    b.add(b3);
    Box b4 = Box.createHorizontalBox();
    b4.add(isCheckBox);
    b4.add(Box.createHorizontalGlue());
    b.add(b4);
    Box b5 = Box.createHorizontalBox();
    b5.add(itrCheckBox);
    b5.add(Box.createHorizontalGlue());
    b.add(b5);
    Box b6 = Box.createHorizontalBox();
    b6.add(ipenCheckBox);
    b6.add(Box.createHorizontalGlue());
    b.add(b6);
    return b;
}

Example 18 with IntTextField

use of edu.cmu.tetradapp.util.IntTextField in project tetrad by cmu-phil.

the class BayesPmParamsEditor method setup.

public void setup() {
    lowerBoundField = new IntTextField(getParams().getInt("lowerBoundNumVals", 2), 4);
    lowerBoundField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                getParams().set("lowerBoundNumVals", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    upperBoundField = new IntTextField(getParams().getInt("upperBoundNumVals", 2), 4);
    upperBoundField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                getParams().set("upperBoundNumVals", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    // construct the workbench.
    setLayout(new BorderLayout());
    JRadioButton setUpManually = new JRadioButton("<html>" + "Set up manually.</html>");
    JRadioButton automaticallyAssigned = new JRadioButton("<html>" + "Automatically assigned.</html>");
    ButtonGroup group = new ButtonGroup();
    group.add(setUpManually);
    group.add(automaticallyAssigned);
    // continue workbench construction.
    Box b1 = Box.createVerticalBox();
    Box b2 = Box.createHorizontalBox();
    b2.add(new JLabel("Categories for variables should be:"));
    b2.add(Box.createHorizontalGlue());
    b1.add(b2);
    b1.add(Box.createVerticalStrut(5));
    Box b3 = Box.createHorizontalBox();
    b3.add(setUpManually);
    b3.add(Box.createHorizontalGlue());
    // b3.add(fixedField);
    b1.add(b3);
    Box b4 = Box.createHorizontalBox();
    b4.add(Box.createHorizontalStrut(25));
    b4.add(new JLabel("<html>" + "All variables will initially have 2 categories, '0' and '1', " + "<br>which can then be changed variable by variable in the editor." + "</html>"));
    b4.add(Box.createHorizontalGlue());
    b1.add(b4);
    b1.add(Box.createVerticalStrut(10));
    Box b5 = Box.createHorizontalBox();
    b5.add(automaticallyAssigned);
    b5.add(Box.createHorizontalGlue());
    b1.add(b5);
    Box b6 = Box.createHorizontalBox();
    b6.add(Box.createHorizontalStrut(25));
    b6.add(new JLabel("<html>" + "Each variable will be automatically be assigned a number" + "<br>of categories (for simulation, e.g.). " + "</html>"));
    b6.add(Box.createHorizontalGlue());
    b1.add(b6);
    b1.add(Box.createVerticalStrut(10));
    Box b7 = Box.createHorizontalBox();
    b7.add(Box.createHorizontalStrut(25));
    b7.add(new JLabel("Least number of categories for each variable:  "));
    b7.add(Box.createHorizontalGlue());
    b7.add(lowerBoundField);
    b1.add(b7);
    Box b8 = Box.createHorizontalBox();
    b8.add(Box.createHorizontalStrut(25));
    b8.add(new JLabel("Greatest number of categories for each variable:  "));
    b8.add(Box.createHorizontalGlue());
    b8.add(upperBoundField);
    b1.add(b8);
    b1.add(Box.createHorizontalGlue());
    add(b1, BorderLayout.CENTER);
    if (getParams().getString("bayesPmInitializationMode", "automatic").equals("automatic")) {
        setUpManually.setSelected(true);
        lowerBoundField.setEnabled(false);
        upperBoundField.setEnabled(false);
    } else {
        automaticallyAssigned.setSelected(true);
        lowerBoundField.setEnabled(true);
        upperBoundField.setEnabled(true);
    }
    setUpManually.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            getParams().set("bayesPmInitializationMode", "manual");
            lowerBoundField.setEnabled(false);
            upperBoundField.setEnabled(false);
        }
    });
    automaticallyAssigned.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            getParams().set("bayesPmInitializationMode", "automatic");
            lowerBoundField.setEnabled(true);
            upperBoundField.setEnabled(true);
        }
    });
}

Example 19 with IntTextField

use of edu.cmu.tetradapp.util.IntTextField in project tetrad by cmu-phil.

the class BootstrapSamplerParamsEditor method buildGui.

// ================================= Private Methods ===============================//
/**
 * Constructs the Gui used to edit properties; called from each constructor.
 * Constructs labels and text fields for editing each property and adds
 * appropriate listeners.
 */
private void buildGui() {
    setLayout(new BorderLayout());
    final IntTextField sampleSizeField = new IntTextField(params.getInt("sampleSize", 1000), 6);
    sampleSizeField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                params.set("sampleSize", value);
                return value;
            } catch (IllegalArgumentException e) {
                return oldValue;
            }
        }
    });
    // continue workbench construction.
    Box b1 = Box.createVerticalBox();
    Box b2 = Box.createHorizontalBox();
    b2.add(new JLabel("<html>" + "The input dataset will be sampled with replacement to create a new" + "<br>dataset with the number of samples entered below."));
    Box b7 = Box.createHorizontalBox();
    b7.add(Box.createHorizontalGlue());
    b7.add(new JLabel("<html>" + "<i>Sample size:  </i>" + "</html>"));
    b7.add(sampleSizeField);
    b1.add(b2);
    b1.add(Box.createVerticalStrut(5));
    b1.add(b7);
    b1.add(Box.createHorizontalGlue());
    add(b1, BorderLayout.CENTER);
}

Example 20 with IntTextField

use of edu.cmu.tetradapp.util.IntTextField in project tetrad by cmu-phil.

the class BayesDataParamsEditor method setup.

/**
 * Constructs the GUI.
 */
public void setup() {
    // set up text and ties them to the parameters object being edited.
    IntTextField sampleSizeField = new IntTextField(getParams().getInt("sampleSize", 1000), 8);
    sampleSizeField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                getParams().set("sampleSize", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    IntTextField numDataSetsField = new IntTextField(getParams().getInt("numDataSets", 1), 8);
    numDataSetsField.setFilter(new IntTextField.Filter() {

        public int filter(int value, int oldValue) {
            try {
                getParams().set("numDataSets", value);
                return value;
            } catch (Exception e) {
                return oldValue;
            }
        }
    });
    // JCheckBox latentDataSaved = new JCheckBox("Include Latent Variables",
    // Preferences.userRoot().getBoolean("latentDataSaved", getParameters().isIncludeLatents()));
    JCheckBox latentDataSaved = new JCheckBox("Include Latent Variables", getParams().getBoolean("latentDataSaved", false));
    latentDataSaved.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            JCheckBox checkBox = (JCheckBox) e.getSource();
            params.set("latentDataSaved", checkBox.isSelected());
        }
    });
    // construct the workbench.
    setLayout(new BorderLayout());
    // continue workbench construction.
    Box b = Box.createVerticalBox();
    Box b1 = Box.createHorizontalBox();
    b1.add(new JLabel("Sample size:  "));
    b1.add(Box.createHorizontalGlue());
    b1.add(sampleSizeField);
    b.add(b1);
    Box b1a = Box.createHorizontalBox();
    b1a.add(new JLabel("Num data sets:  "));
    b1a.add(Box.createHorizontalGlue());
    b1a.add(numDataSetsField);
    b.add(b1a);
    Box b2 = Box.createHorizontalBox();
    b2.add(latentDataSaved);
    b.add(b2);
    add(b, BorderLayout.CENTER);
    setBorder(new EmptyBorder(5, 5, 5, 5));
}