Examples with GraphWorkbench edu.cmu.tetradapp.workbench.GraphWorkbench used on opensource projects

Example 6 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class MimSearchEditor method workbenchScroll.

private JScrollPane workbenchScroll(String resultLabel) {
    Graph resultGraph = resultGraph();
    Graph sourceGraph = getMimRunner().getSourceGraph();
    Graph latestWorkbenchGraph = (Graph) getMimRunner().getParams().get("sourceGraph", null);
    boolean arrangedAll = GraphUtils.arrangeBySourceGraph(resultGraph, latestWorkbenchGraph);
    if (!arrangedAll) {
        GraphUtils.arrangeBySourceGraph(resultGraph, sourceGraph);
    }
    this.workbench = new GraphWorkbench(resultGraph);
    this.workbench.setAllowDoubleClickActions(false);
    this.workbenchScroll = new JScrollPane(getWorkbench());
    getWorkbenchScroll().setPreferredSize(new Dimension(450, 450));
    getWorkbenchScroll().setBorder(new TitledBorder(resultLabel));
    this.workbench.addMouseListener(new MouseAdapter() {

        public void mouseExited(MouseEvent e) {
            storeLatestWorkbenchGraph();
        }
    });
    return getWorkbenchScroll();
}

Example 7 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class MimSearchEditor method updateDisplayPanel.

private void updateDisplayPanel() {
    displayPanel.removeAll();
    JTabbedPane tabbedPane = new JTabbedPane();
    if (getMimRunner().getStructureGraph() != null) {
        if (getMimRunner().getStructureGraph() != null) {
            // DataGraphUtils.circleLayout(structureGraph, 200, 200, 150);
            Graph structureGraph = getMimRunner().getStructureGraph();
            doDefaultArrangement(structureGraph);
            GraphWorkbench structureWorkbench = new GraphWorkbench(structureGraph);
            structureWorkbench.setAllowDoubleClickActions(false);
            tabbedPane.add("Structure Model", new JScrollPane(structureWorkbench));
        }
    }
    if (getMimRunner().getClusters() != null) {
        ClusterEditor editor = new ClusterEditor(getMimRunner().getClusters(), getMimRunner().getData().getVariableNames());
        ClusterEditor clusterEditor = editor;
        tabbedPane.add("Measurement Model", editor);
    }
    if (getMimRunner().getFullGraph() != null) {
        Graph fullGraph = getMimRunner().getFullGraph();
        doDefaultArrangement(fullGraph);
        GraphUtils.fruchtermanReingoldLayout(fullGraph);
        GraphWorkbench fullGraphBench = new GraphWorkbench(fullGraph);
        tabbedPane.add("Full Graph", new JScrollPane(fullGraphBench));
    }
    displayPanel.add(tabbedPane, BorderLayout.CENTER);
    displayPanel.revalidate();
    displayPanel.repaint();
}

Example 8 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class PcGesSearchEditor method layoutByKnowledge.

public void layoutByKnowledge() {
    GraphWorkbench resultWorkbench = getWorkbench();
    Graph graph = resultWorkbench.getGraph();
    IKnowledge knowledge = (IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2());
    SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
}

Example 9 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class PcGesSearchEditor method addSpecialMenus.

protected void addSpecialMenus(JMenuBar menuBar) {
    if (!(getAlgorithmRunner() instanceof IGesRunner)) {
        JMenu test = new JMenu("Independence");
        menuBar.add(test);
        IndTestMenuItems.addIndependenceTestChoices(test, this);
    // test.addSeparator();
    // 
    // AlgorithmRunner algorithmRunner = getAlgorithmRunner();
    // if (algorithmRunner instanceof IndTestProducer) {
    // IndTestProducer p = (IndTestProducer) algorithmRunner;
    // IndependenceFactsAction action =
    // new IndependenceFactsAction(this, p, "Independence Facts...");
    // test.add(action);
    // }
    }
    JMenu graph = new JMenu("Graph");
    JMenuItem showDags = new JMenuItem("Show DAGs in forbid_latent_common_causes");
    // JMenuItem meekOrient = new JMenuItem("Meek Orientation");
    JMenuItem dagInPattern = new JMenuItem("Choose DAG in forbid_latent_common_causes");
    JMenuItem gesOrient = new JMenuItem("Global Score-based Reorientation");
    JMenuItem nextGraph = new JMenuItem("Next Graph");
    JMenuItem previousGraph = new JMenuItem("Previous Graph");
    // graph.add(new LayoutMenu(this));
    graph.add(new GraphPropertiesAction(getWorkbench()));
    graph.add(new PathsAction(getWorkbench()));
    // graph.add(new DirectedPathsAction(getWorkbench()));
    // graph.add(new TreksAction(getWorkbench()));
    // graph.add(new AllPathsAction(getWorkbench()));
    // graph.add(new NeighborhoodsAction(getWorkbench()));
    graph.add(new TriplesAction(getWorkbench().getGraph(), getAlgorithmRunner()));
    graph.addSeparator();
    // graph.add(meekOrient);
    graph.add(dagInPattern);
    graph.add(gesOrient);
    graph.addSeparator();
    graph.add(previousGraph);
    graph.add(nextGraph);
    graph.addSeparator();
    graph.add(showDags);
    graph.addSeparator();
    graph.add(new JMenuItem(new SelectBidirectedAction(getWorkbench())));
    graph.add(new JMenuItem(new SelectUndirectedAction(getWorkbench())));
    menuBar.add(graph);
    showDags.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Window owner = (Window) getTopLevelAncestor();
            new WatchedProcess(owner) {

                public void watch() {
                    // Needs to be a pattern search; this isn't checked
                    // before running the algorithm because of allowable
                    // "slop"--e.g. bidirected edges.
                    AlgorithmRunner runner = getAlgorithmRunner();
                    Graph graph = runner.getGraph();
                    if (graph == null) {
                        JOptionPane.showMessageDialog(JOptionUtils.centeringComp(), "No result gaph.");
                        return;
                    }
                    // if (runner instanceof ImagesRunner) {
                    // GraphScorer scorer = ((ImagesRunner) runner).getGraphScorer();
                    // Graph _graph = ((ImagesRunner) runner).getTopGraphs().get(getIndex()).getGraph();
                    // 
                    // ScoredGraphsDisplay display = new ScoredGraphsDisplay(_graph, scorer);
                    // GraphWorkbench workbench = getWorkbench();
                    // 
                    // EditorWindow editorWindow =
                    // new EditorWindow(display, "Independence Facts",
                    // "Close", false, workbench);
                    // DesktopController.getInstance().addEditorWindow(editorWindow, JLayeredPane.PALETTE_LAYER);
                    // editorWindow.setVisible(true);
                    // }
                    // else {
                    PatternDisplay display = new PatternDisplay(graph);
                    GraphWorkbench workbench = getWorkbench();
                    EditorWindow editorWindow = new EditorWindow(display, "Independence Facts", "Close", false, workbench);
                    DesktopController.getInstance().addEditorWindow(editorWindow, JLayeredPane.PALETTE_LAYER);
                    editorWindow.setVisible(true);
                // }
                }
            };
        }
    });
    // meekOrient.addActionListener(new ActionListener() {
    // public void actionPerformed(ActionEvent e) {
    // ImpliedOrientation rules = getAlgorithmRunner().getMeekRules();
    // rules.setKnowledge((IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2()));
    // rules.orientImplied(getGraph());
    // getGraphHistory().add(getGraph());
    // getWorkbench().setGraph(getGraph());
    // firePropertyChange("modelChanged", null, null);
    // }
    // });
    dagInPattern.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph graph = new EdgeListGraph(getGraph());
            // // Removing bidirected edges from the pattern before selecting a DAG.                                   4
            // for (Edge edge : graph.getEdges()) {
            // if (Edges.isBidirectedEdge(edge)) {
            // graph.removeEdge(edge);
            // }
            // }
            Graph dag = SearchGraphUtils.dagFromPattern(graph);
            // PatternToDag search = new PatternToDag(new forbid_latent_common_causes(graph));
            // Graph dag = search.patternToDagMeek();
            getGraphHistory().add(dag);
            getWorkbench().setGraph(dag);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(dag);
            firePropertyChange("modelChanged", null, null);
        }
    });
    gesOrient.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            DataModel dataModel = getAlgorithmRunner().getDataModel();
            final Graph graph = SearchGraphUtils.reorient(getGraph(), dataModel, getKnowledge());
            getGraphHistory().add(graph);
            getWorkbench().setGraph(graph);
            firePropertyChange("modelChanged", null, null);
        }
    });
    nextGraph.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph next = getGraphHistory().next();
            getWorkbench().setGraph(next);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(next);
            firePropertyChange("modelChanged", null, null);
        }
    });
    previousGraph.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph previous = getGraphHistory().previous();
            getWorkbench().setGraph(previous);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(previous);
            firePropertyChange("modelChanged", null, null);
        }
    });
    // if (getAlgorithmRunner().supportsKnowledge()) {
    // menuBar.add(new Knowledge2Menu(this));
    // }
    menuBar.add(new LayoutMenu(this));
}

Example 10 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class DagEditor method editGraph.

private void editGraph(Graph graph) {
    this.workbench = new GraphWorkbench(graph);
    DagGraphToolbar toolbar = new DagGraphToolbar(getWorkbench());
    JMenuBar menuBar = createGraphMenuBar();
    JScrollPane scroll = new JScrollPane();
    scroll.setPreferredSize(new Dimension(450, 450));
    scroll.setViewportView(getWorkbench());
    add(scroll, BorderLayout.CENTER);
    add(toolbar, BorderLayout.WEST);
    add(menuBar, BorderLayout.NORTH);
    JLabel label = new JLabel("Double click variable to change name. More information on graph edge types");
    label.setFont(new Font("SansSerif", Font.PLAIN, 12));
    // Info button added by Zhou to show edge types
    JButton infoBtn = new JButton(new ImageIcon(ImageUtils.getImage(this, "info.png")));
    infoBtn.setBorder(new EmptyBorder(0, 0, 0, 0));
    // Clock info button to show edge types instructions - Zhou
    infoBtn.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            helpSet.setHomeID("graph_edge_types");
            HelpBroker broker = helpSet.createHelpBroker();
            ActionListener listener = new CSH.DisplayHelpFromSource(broker);
            listener.actionPerformed(e);
        }
    });
    Box b = Box.createHorizontalBox();
    b.add(Box.createHorizontalStrut(2));
    b.add(label);
    b.add(infoBtn);
    b.add(Box.createHorizontalGlue());
    b.setBorder(new MatteBorder(0, 0, 1, 0, Color.GRAY));
    add(b, BorderLayout.SOUTH);
    validate();
}