Examples with GraphWorkbench edu.cmu.tetradapp.workbench.GraphWorkbench used on opensource projects

Example 11 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class AbstractSearchEditor method workbenchScroll.

JScrollPane workbenchScroll(String resultLabel) {
    Graph resultGraph = resultGraph();
    Graph sourceGraph = algorithmRunner.getSourceGraph();
    Parameters searchParams = algorithmRunner.getParams();
    Graph latestWorkbenchGraph = null;
    if (searchParams != null) {
        latestWorkbenchGraph = (Graph) searchParams.get("sourceGraph", null);
    }
    if (latestWorkbenchGraph == null) {
        GraphUtils.arrangeBySourceGraph(resultGraph, sourceGraph);
    } else {
        GraphUtils.arrangeBySourceGraph(resultGraph, latestWorkbenchGraph);
    }
    // boolean arrangedAll = DataGraphUtils.arrangeBySourceGraph(resultGraph,
    // latestWorkbenchGraph);
    // 
    // if (!arrangedAll) {
    // arrangedAll =
    // DataGraphUtils.arrangeBySourceGraph(resultGraph, sourceGraph);
    // }
    // if (!arrangedAll) {
    // DataGraphUtils.circleLayout(resultGraph, 200, 200, 150);
    // }
    this.workbench = new GraphWorkbench(resultGraph);
    graphHistory.clear();
    graphHistory.add(resultGraph);
    this.workbench.setAllowDoubleClickActions(false);
    this.workbench.setAllowNodeEdgeSelection(true);
    this.workbenchScroll = new JScrollPane(workbench);
    // workbenchScroll.setPreferredSize(new Dimension(450, 450));
    // workbenchScroll.setBorder(new TitledBorder(resultLabel));
    this.workbench.addMouseListener(new MouseAdapter() {

        public void mouseExited(MouseEvent e) {
            storeLatestWorkbenchGraph();
        }
    });
    return workbenchScroll;
}

Example 12 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class BayesImEditor method setEditorPanel.

private void setEditorPanel() {
    JPanel panel = new JPanel();
    panel.setLayout(new BorderLayout());
    BayesIm bayesIm = wrapper.getBayesIm();
    Graph graph = bayesIm.getDag();
    GraphWorkbench workbench = new GraphWorkbench(graph);
    JMenuBar menuBar = new JMenuBar();
    JMenu file = new JMenu("File");
    menuBar.add(file);
    file.add(new SaveBayesImXmlAction(this));
    file.add(new LoadBayesImXmlAction(wrapper, this));
    file.add(new LoadBayesImXsdlXmlAction(wrapper, this));
    file.add(new SaveScreenshot(this, true, "Save Screenshot..."));
    file.add(new SaveComponentImage(workbench, "Save Graph Image..."));
    setLayout(new BorderLayout());
    panel.add(menuBar, BorderLayout.NORTH);
    wizard = new BayesImEditorWizard(bayesIm, workbench);
    wizard.addPropertyChangeListener(new PropertyChangeListener() {

        public void propertyChange(PropertyChangeEvent evt) {
            if ("editorValueChanged".equals(evt.getPropertyName())) {
                firePropertyChange("modelChanged", null, null);
            }
        }
    });
    JScrollPane workbenchScroll = new JScrollPane(workbench);
    JScrollPane wizardScroll = new JScrollPane(getWizard());
    workbenchScroll.setPreferredSize(new Dimension(450, 450));
    JSplitPane splitPane = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, workbenchScroll, wizardScroll);
    splitPane.setOneTouchExpandable(true);
    splitPane.setDividerLocation(workbenchScroll.getPreferredSize().width);
    panel.add(splitPane, BorderLayout.CENTER);
    setName("Bayes IM Editor");
    getWizard().addPropertyChangeListener(new PropertyChangeListener() {

        public void propertyChange(PropertyChangeEvent evt) {
            if ("editorClosing".equals(evt.getPropertyName())) {
                firePropertyChange("editorClosing", null, getName());
            }
            if ("closeFrame".equals(evt.getPropertyName())) {
                firePropertyChange("closeFrame", null, null);
                firePropertyChange("editorClosing", true, true);
            }
            if ("modelChanged".equals(evt.getPropertyName())) {
                firePropertyChange("modelChanged", evt.getOldValue(), evt.getNewValue());
            }
        }
    });
    targetPanel.add(panel, BorderLayout.CENTER);
    validate();
}

Example 13 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class FgesSearchEditor method layoutByKnowledge.

public void layoutByKnowledge() {
    GraphWorkbench resultWorkbench = getWorkbench();
    Graph graph = resultWorkbench.getGraph();
    IKnowledge knowledge = (IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2());
    SearchGraphUtils.arrangeByKnowledgeTiers(graph, knowledge);
// resultWorkbench.setGraph(graph);
}

Example 14 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class FgesSearchEditor method addSpecialMenus.

protected void addSpecialMenus(JMenuBar menuBar) {
    if (!(getAlgorithmRunner() instanceof FgesRunner)) {
        JMenu test = new JMenu("Independence");
        menuBar.add(test);
        IndTestMenuItems.addIndependenceTestChoices(test, this);
    // test.addSeparator();
    // 
    // AlgorithmRunner algorithmRunner = getAlgorithmRunner();
    // if (algorithmRunner instanceof IndTestProducer) {
    // IndTestProducer p = (IndTestProducer) algorithmRunner;
    // IndependenceFactsAction action =
    // new IndependenceFactsAction(this, p, "Independence Facts...");
    // test.add(action);
    // }
    }
    JMenu graph = new JMenu("Graph");
    JMenuItem showDags = new JMenuItem("Show DAGs in forbid_latent_common_causes");
    // JMenuItem meekOrient = new JMenuItem("Meek Orientation");
    final JMenuItem dagInPattern = new JMenuItem("Choose DAG in forbid_latent_common_causes");
    JMenuItem gesOrient = new JMenuItem("Global Score-based Reorientation");
    JMenuItem nextGraph = new JMenuItem("Next Graph");
    JMenuItem previousGraph = new JMenuItem("Previous Graph");
    graph.add(new GraphPropertiesAction(getWorkbench()));
    graph.add(new PathsAction(getWorkbench()));
    // graph.add(new DirectedPathsAction(getWorkbench()));
    // graph.add(new TreksAction(getWorkbench()));
    // graph.add(new AllPathsAction(getWorkbench()));
    // graph.add(new NeighborhoodsAction(getWorkbench()));
    // graph.add(new TriplesAction(getWorkbench(), getAlgorithmRunner()));
    graph.addSeparator();
    // graph.add(meekOrient);
    graph.add(dagInPattern);
    graph.add(gesOrient);
    graph.addSeparator();
    graph.add(previousGraph);
    graph.add(nextGraph);
    graph.addSeparator();
    graph.add(showDags);
    graph.addSeparator();
    graph.add(new JMenuItem(new SelectBidirectedAction(getWorkbench())));
    graph.add(new JMenuItem(new SelectUndirectedAction(getWorkbench())));
    menuBar.add(graph);
    showDags.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Window owner = (Window) getTopLevelAncestor();
            new WatchedProcess(owner) {

                public void watch() {
                    // Needs to be a pattern search; this isn't checked
                    // before running the algorithm because of allowable
                    // "slop"--e.g. bidirected edges.
                    AlgorithmRunner runner = getAlgorithmRunner();
                    Graph graph = runner.getGraph();
                    if (graph == null) {
                        JOptionPane.showMessageDialog(JOptionUtils.centeringComp(), "No result gaph.");
                        return;
                    }
                    if (runner instanceof FgesRunner) {
                        GraphScorer scorer = ((FgesRunner) runner).getGraphScorer();
                        Graph _graph = ((FgesRunner) runner).getTopGraphs().get(getIndex()).getGraph();
                        ScoredGraphsDisplay display = new ScoredGraphsDisplay(_graph, scorer);
                        GraphWorkbench workbench = getWorkbench();
                        EditorWindow editorWindow = new EditorWindow(display, "Independence Facts", "Close", false, workbench);
                        DesktopController.getInstance().addEditorWindow(editorWindow, JLayeredPane.PALETTE_LAYER);
                        editorWindow.setVisible(true);
                    } else {
                        PatternDisplay display = new PatternDisplay(graph);
                        GraphWorkbench workbench = getWorkbench();
                        EditorWindow editorWindow = new EditorWindow(display, "Independence Facts", "Close", false, workbench);
                        DesktopController.getInstance().addEditorWindow(editorWindow, JLayeredPane.PALETTE_LAYER);
                        editorWindow.setVisible(true);
                    }
                }
            };
        }
    });
    // meekOrient.addActionListener(new ActionListener() {
    // public void actionPerformed(ActionEvent e) {
    // ImpliedOrientation rules = getAlgorithmRunner().getMeekRules();
    // rules.setKnowledge((IKnowledge) getAlgorithmRunner().getParams().get("knowledge", new Knowledge2()));
    // rules.orientImplied(getGraph());
    // getGraphHistory().add(getGraph());
    // getWorkbench().setGraph(getGraph());
    // firePropertyChange("modelChanged", null, null);
    // }
    // });
    dagInPattern.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph graph = new EdgeListGraph(getGraph());
            // Removing bidirected edges from the pattern before selecting a DAG.                                   4
            for (Edge edge : graph.getEdges()) {
                if (Edges.isBidirectedEdge(edge)) {
                    graph.removeEdge(edge);
                }
            }
            PatternToDag search = new PatternToDag(new EdgeListGraphSingleConnections(graph));
            Graph dag = search.patternToDagMeek();
            getGraphHistory().add(dag);
            getWorkbench().setGraph(dag);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(dag);
            firePropertyChange("modelChanged", null, null);
        }
    });
    gesOrient.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            DataModel dataModel = getAlgorithmRunner().getDataModel();
            final Graph graph = SearchGraphUtils.reorient(getGraph(), dataModel, getKnowledge());
            getGraphHistory().add(graph);
            getWorkbench().setGraph(graph);
            firePropertyChange("modelChanged", null, null);
        }
    });
    nextGraph.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph next = getGraphHistory().next();
            getWorkbench().setGraph(next);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(next);
            firePropertyChange("modelChanged", null, null);
        }
    });
    previousGraph.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent e) {
            Graph previous = getGraphHistory().previous();
            getWorkbench().setGraph(previous);
            ((AbstractAlgorithmRunner) getAlgorithmRunner()).setResultGraph(previous);
            firePropertyChange("modelChanged", null, null);
        }
    });
    menuBar.add(new LayoutMenu(this));
}

Example 15 with GraphWorkbench

use of edu.cmu.tetradapp.workbench.GraphWorkbench in project tetrad by cmu-phil.

the class FofcSearchEditor method updateDisplayPanel.

private void updateDisplayPanel() {
    displayPanel.removeAll();
    JTabbedPane tabbedPane = new JTabbedPane();
    if (getMimRunner().getStructureGraph() != null) {
        if (getMimRunner().getStructureGraph() != null) {
            // DataGraphUtils.circleLayout(structureGraph, 200, 200, 150);
            Graph structureGraph = getMimRunner().getStructureGraph();
            doDefaultArrangement(structureGraph);
            GraphWorkbench structureWorkbench = new GraphWorkbench(structureGraph);
            structureWorkbench.setAllowDoubleClickActions(false);
            tabbedPane.add("Structure Model", new JScrollPane(structureWorkbench));
        }
    }
    if (getMimRunner().getClusters() != null) {
        ClusterEditor editor = new ClusterEditor(getMimRunner().getClusters(), getMimRunner().getData().getVariableNames());
        tabbedPane.add("Measurement Model", editor);
    }
    if (getMimRunner().getFullGraph() != null) {
        Graph fullGraph = getMimRunner().getFullGraph();
        doDefaultArrangement(fullGraph);
        GraphUtils.fruchtermanReingoldLayout(fullGraph);
        GraphWorkbench fullGraphBench = new GraphWorkbench(fullGraph);
        tabbedPane.add("Full Graph", new JScrollPane(fullGraphBench));
    }
    displayPanel.add(tabbedPane, BorderLayout.CENTER);
    displayPanel.revalidate();
    displayPanel.repaint();
}