Examples with ProjectId edu.stanford.bmir.protege.web.shared.project.ProjectId used on opensource projects

Example 16 with ProjectId

use of edu.stanford.bmir.protege.web.shared.project.ProjectId in project webprotege by protegeproject.

the class ProjectDocumentStore method loadProjectOntologiesIntoManager.

private OWLOntology loadProjectOntologiesIntoManager(OWLOntologyManager manager) throws OWLOntologyCreationException {
    logger.info("{} Loading project", projectId);
    long t0 = System.currentTimeMillis();
    OWLOntologyLoaderListener loaderListener = new OWLOntologyLoaderListener() {

        public void startedLoadingOntology(LoadingStartedEvent event) {
            logger.info("{} Ontology loading started: {}", projectId, event.getDocumentIRI());
        }

        public void finishedLoadingOntology(LoadingFinishedEvent event) {
            // Give something else a chance - in case we have LOTS of imports
            Thread.yield();
            if (event.isSuccessful()) {
                logger.info("{} Ontology loading finished: (Loaded:  {})", projectId, event.getDocumentIRI(), event.getOntologyID());
                MemoryMonitor memoryMonitor = new MemoryMonitor(logger);
                memoryMonitor.monitorMemoryUsage();
            } else {
                logger.info("Ontology loading failed: {} (Reason: )", projectId, event.getException().getMessage());
            }
        }
    };
    manager.addOntologyLoaderListener(loaderListener);
    final MissingImportListener missingImportListener = (MissingImportListener) missingImportEvent -> logger.info("{} Missing import: {} due to {}", projectId, missingImportEvent.getImportedOntologyURI(), missingImportEvent.getCreationException().getMessage());
    manager.addMissingImportListener(missingImportListener);
    manager.getIRIMappers().add((OWLOntologyIRIMapper) iri -> {
        logger.info("{} Fetching imported ontology from {}.", projectId, iri.toQuotedString());
        return iri;
    });
    // Important - add last
    ImportsCacheManager importsCacheManager = importsCacheManagerProvider.get();
    OWLOntologyIRIMapper iriMapper = importsCacheManager.getIRIMapper();
    manager.getIRIMappers().add(iriMapper);
    try {
        OWLOntologyLoaderConfiguration config = new OWLOntologyLoaderConfiguration();
        config = config.setMissingImportHandlingStrategy(MissingImportHandlingStrategy.SILENT);
        config = config.setReportStackTraces(true);
        // It is safe to turn of illegal punning fixing as we've already parsed (and saved) the ontology
        // using a manager with this turned on.
        config = config.setRepairIllegalPunnings(false);
        logger.info("{} Loading root ontology imports closure.", projectId);
        ProjectInputSource projectInputSource = new ProjectInputSource(rootOntologyDocument);
        OWLOntology rootOntology = manager.loadOntologyFromOntologyDocument(projectInputSource, config);
        importsCacheManager.cacheImports(rootOntology);
        return rootOntology;
    } finally {
        long t1 = System.currentTimeMillis();
        logger.info("{} Ontology loading completed in {} ms.", projectId, (t1 - t0));
        MemoryMonitor memoryMonitor = new MemoryMonitor(logger);
        memoryMonitor.monitorMemoryUsage();
        memoryMonitor.logMemoryUsage();
        manager.removeIRIMapper(iriMapper);
        manager.removeOntologyLoaderListener(loaderListener);
        manager.removeMissingImportListener(missingImportListener);
    }
}

Example 17 with ProjectId

use of edu.stanford.bmir.protege.web.shared.project.ProjectId in project webprotege by protegeproject.

the class ProjectCache method getProject.

public ProjectId getProject(NewProjectSettings newProjectSettings) throws ProjectAlreadyExistsException, OWLOntologyCreationException, OWLOntologyStorageException, IOException {
    ProjectId projectId = ProjectIdFactory.getFreshProjectId();
    if (newProjectSettings.hasSourceDocument()) {
        ProjectImporter importer = projectImporterFactory.getProjectImporter(projectId);
        importer.createProjectFromSources(newProjectSettings.getSourceDocumentId(), newProjectSettings.getProjectOwner());
    }
    return getProjectInternal(projectId, AccessMode.NORMAL).getProjectId();
}

Example 18 with ProjectId

use of edu.stanford.bmir.protege.web.shared.project.ProjectId in project webprotege by protegeproject.

the class ProjectCache method purgeDormantProjects.

private void purgeDormantProjects() {
    // No locking needed
    for (ProjectId projectId : getCachedProjectIds()) {
        long time = getLastAccessTime(projectId);
        long lastAccessTimeDiff = System.currentTimeMillis() - time;
        if (time == 0 || lastAccessTimeDiff > DORMANT_PROJECT_TIME_MS) {
            purge(projectId);
        }
    }
}

Example 19 with ProjectId

use of edu.stanford.bmir.protege.web.shared.project.ProjectId in project webprotege by protegeproject.

the class CreateNewProjectActionHandler method execute.

@Nonnull
@Override
public CreateNewProjectResult execute(@Nonnull CreateNewProjectAction action, @Nonnull ExecutionContext executionContext) {
    try {
        UserId userId = executionContext.getUserId();
        if (!accessManager.hasPermission(forUser(userId), ApplicationResource.get(), CREATE_EMPTY_PROJECT)) {
            throw new PermissionDeniedException("You do not have permission to create new projects", userInSessionFactory.getUserInSession(userId));
        }
        NewProjectSettings newProjectSettings = action.getNewProjectSettings();
        if (newProjectSettings.hasSourceDocument()) {
            if (!accessManager.hasPermission(forUser(userId), ApplicationResource.get(), UPLOAD_PROJECT)) {
                throw new PermissionDeniedException("You do not have permission to upload projects", userInSessionFactory.getUserInSession(userId));
            }
        }
        ProjectId projectId = pm.createNewProject(newProjectSettings);
        if (!projectDetailsManager.isExistingProject(projectId)) {
            projectDetailsManager.registerProject(projectId, newProjectSettings);
            applyDefaultPermissions(projectId, userId);
        }
        return new CreateNewProjectResult(projectDetailsManager.getProjectDetails(projectId));
    } catch (OWLOntologyCreationException | OWLOntologyStorageException | IOException e) {
        throw new RuntimeException(e);
    }
}

Example 20 with ProjectId

use of edu.stanford.bmir.protege.web.shared.project.ProjectId in project webprotege by protegeproject.

the class GetProjectPrefixDeclarationsActionHandler method execute.

@Nonnull
@Override
public GetProjectPrefixDeclarationsResult execute(@Nonnull GetProjectPrefixDeclarationsAction action, @Nonnull ExecutionContext executionContext) {
    ProjectId projectId = action.getProjectId();
    List<PrefixDeclaration> decls = store.find(projectId).getPrefixes().entrySet().stream().map(entry -> PrefixDeclaration.get(entry.getKey(), entry.getValue())).collect(toList());
    return new GetProjectPrefixDeclarationsResult(projectId, decls);
}