Examples with MainFrame edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.TransClust.de.costmatrixcreation.gui.MainFrame used on opensource projects

Example 1 with MainFrame

use of edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.TransClust.de.costmatrixcreation.gui.MainFrame in project clusterMaker2 by RBVI.

the class CostMatrixCreator method main.

/**
 * @param args
 * @throws IOException
 * @throws ArgsParseException
 */
public static void main(String[] args) throws IOException, ArgsParseException {
    Args options = new Args(args, "-");
    if (options.options.containsKey("help") || options.options.containsKey("h") || options.options.containsKey("-help")) {
        printUsage();
        System.exit(0);
    }
    Config.init(options);
    if (Config.gui) {
        MainFrame f = new MainFrame();
        f.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
        f.setVisible(true);
        // f.pack();
        f.setSize(900, 900);
        Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
        int top = (screenSize.height - f.getHeight()) / 2;
        int left = (screenSize.width - f.getWidth()) / 2;
        f.setLocation(left, top);
        JPanel fPanel = (JPanel) f.getContentPane();
        fPanel.add(new JSeparator());
        fPanel.add(new JLabel(" "));
        fPanel.add(new JLabel("Status:"));
        fPanel.add(new JLabel(" "));
        fPanel.add(Console.getConsolePanel());
        Console.println("Welcome...");
        fPanel.updateUI();
    } else {
        HashMap<Integer, String> proteins2integers = new HashMap<Integer, String>();
        HashMap<String, Integer> integers2proteins = new HashMap<String, Integer>();
        if (Config.createSimilarityFile) {
            Creator c = new Creator();
            c.run(proteins2integers, integers2proteins);
        }
        if (Config.splitAndWriteCostMatrices) {
            Splitter s = new Splitter();
            s.run(proteins2integers, integers2proteins);
        }
    }
}