Examples with Cell eu.esdihumboldt.hale.common.align.model.Cell used on opensource projects

Example 91 with Cell

use of eu.esdihumboldt.hale.common.align.model.Cell in project hale by halestudio.

the class FeatureChainingConfigurationPage method onShowPage.

/**
 * @see eu.esdihumboldt.hale.ui.HaleWizardPage#onShowPage(boolean)
 */
@Override
protected void onShowPage(boolean firstShow) {
    super.onShowPage(firstShow);
    if (firstShow) {
        for (ChainPage page : pages) page.dispose();
        pages.clear();
        AlignmentService alignmentService = HaleUI.getServiceProvider().getService(AlignmentService.class);
        Alignment alignment = alignmentService.getAlignment();
        int pageIdx = 0;
        Collection<? extends Cell> typeCells = alignment.getActiveTypeCells();
        for (Cell typeCell : typeCells) {
            if (AppSchemaMappingUtils.isJoin(typeCell)) {
                JoinParameter joinParameter = getJoinParameter(typeCell);
                List<JoinCondition> conditions = getSortedJoinConditions(joinParameter);
                TypeEntityDefinition joinTarget = getTargetType(typeCell).getDefinition();
                for (int i = 0; i < joinParameter.getTypes().size() - 1; i++) {
                    ChainPage chainPage = new ChainPage(pageIdx, typeCell.getId(), i, joinParameter.getTypes(), conditions, joinTarget);
                    chainPage.setWizard(getWizard());
                    pages.add(chainPage);
                    pageIdx++;
                }
            }
        }
    }
    setPageComplete(true);
    if (!goingBack) {
        getContainer().showPage(getNextPage());
    } else {
        getContainer().showPage(getPreviousPage());
    }
}

Example 92 with Cell

use of eu.esdihumboldt.hale.common.align.model.Cell in project hale by halestudio.

the class AppSchemaMappingGenerator method createTypeMappings.

private void createTypeMappings(AppSchemaMappingContext context, IOReporter reporter) {
    Collection<? extends Cell> typeCells = alignment.getTypeCells();
    for (Cell typeCell : typeCells) {
        String typeTransformId = typeCell.getTransformationIdentifier();
        TypeTransformationHandler typeTransformHandler = null;
        try {
            typeTransformHandler = TypeTransformationHandlerFactory.getInstance().createTypeTransformationHandler(typeTransformId);
            FeatureTypeMapping ftMapping = typeTransformHandler.handleTypeTransformation(typeCell, context);
            if (ftMapping != null) {
                Collection<? extends Cell> propertyCells = alignment.getPropertyCells(typeCell);
                for (Cell propertyCell : propertyCells) {
                    String propertyTransformId = propertyCell.getTransformationIdentifier();
                    PropertyTransformationHandler propertyTransformHandler = null;
                    try {
                        propertyTransformHandler = PropertyTransformationHandlerFactory.getInstance().createPropertyTransformationHandler(propertyTransformId);
                        propertyTransformHandler.handlePropertyTransformation(typeCell, propertyCell, context);
                    } catch (UnsupportedTransformationException e) {
                        String errMsg = MessageFormat.format("Error processing property cell {0}", propertyCell.getId());
                        log.warn(errMsg, e);
                        if (reporter != null) {
                            reporter.warn(new IOMessageImpl(errMsg, e));
                        }
                    }
                }
            }
        } catch (UnsupportedTransformationException e) {
            String errMsg = MessageFormat.format("Error processing type cell{0}", typeCell.getId());
            log.warn(errMsg, e);
            if (reporter != null) {
                reporter.warn(new IOMessageImpl(errMsg, e));
            }
        }
    }
}

Example 93 with Cell

use of eu.esdihumboldt.hale.common.align.model.Cell in project hale by halestudio.

the class JoinHandler method handleTypeTransformation.

/**
 * @see eu.esdihumboldt.hale.io.appschema.writer.internal.TypeTransformationHandler#handleTypeTransformation(eu.esdihumboldt.hale.common.align.model.Cell,
 *      eu.esdihumboldt.hale.io.appschema.writer.internal.mapping.AppSchemaMappingContext)
 */
@Override
public FeatureTypeMapping handleTypeTransformation(Cell typeCell, AppSchemaMappingContext context) {
    AppSchemaMappingWrapper mapping = context.getMappingWrapper();
    Alignment alignment = context.getAlignment();
    FeatureChaining featureChaining = context.getFeatureChaining();
    final JoinParameter joinParameter = typeCell.getTransformationParameters().get(PARAMETER_JOIN).get(0).as(JoinParameter.class);
    String validation = joinParameter.validate();
    if (validation != null)
        throw new IllegalArgumentException("Join parameter invalid: " + validation);
    // check only single predicate conditions have been used
    int[] conditionCount = new int[joinParameter.getTypes().size()];
    List<JoinCondition> joinConditions = getSortedJoinConditions(joinParameter);
    for (JoinCondition joinCondition : joinConditions) {
        TypeEntityDefinition joinType = AlignmentUtil.getTypeEntity(joinCondition.joinProperty);
        int typeIdx = joinParameter.getTypes().indexOf(joinType);
        conditionCount[typeIdx]++;
        if (conditionCount[typeIdx] > 1) {
            throw new IllegalArgumentException("Only single condition joins are supported so far");
        }
    }
    FeatureTypeMapping topMostMapping = null;
    for (int chainIdx = 0; chainIdx < joinParameter.getTypes().size() - 1; chainIdx++) {
        ChainConfiguration previousChainConf = null;
        ChainConfiguration chainConf = null;
        if (featureChaining != null) {
            chainConf = featureChaining.getChain(typeCell.getId(), chainIdx);
            if (chainConf != null && chainConf.getPrevChainIndex() >= 0) {
                previousChainConf = featureChaining.getChain(typeCell.getId(), chainConf.getPrevChainIndex());
            }
        }
        // join is done pair-wise: I assume the first type is the container
        // type, whereas the second type is nested in the first
        JoinCondition joinCondition = joinConditions.get(chainIdx);
        baseProperty = joinCondition.baseProperty;
        joinProperty = joinCondition.joinProperty;
        TypeEntityDefinition containerType = AlignmentUtil.getTypeEntity(baseProperty);
        TypeEntityDefinition nestedType = AlignmentUtil.getTypeEntity(joinProperty);
        // build FeatureTypeMapping for container type
        // Entity containerTypeTarget = typeCell.getTarget().values().iterator().next();
        // TypeDefinition containerTypeTargetType = containerTypeTarget.getDefinition().getType();
        EntityDefinition containerTypeTarget = null;
        TypeDefinition containerTypeTargetType = null;
        String containerTypeTargetMappingName = null;
        if (previousChainConf == null) {
            containerTypeTarget = getTargetType(typeCell).getDefinition();
            containerTypeTargetType = containerTypeTarget.getType();
        } else {
            containerTypeTarget = previousChainConf.getNestedTypeTarget();
            containerTypeTargetType = previousChainConf.getNestedTypeTarget().getDefinition().getPropertyType();
            containerTypeTargetMappingName = previousChainConf.getMappingName();
        }
        String containerMappingName = null;
        if (previousChainConf != null) {
            containerMappingName = previousChainConf.getMappingName();
        }
        FeatureTypeMapping containerFTMapping = context.getOrCreateFeatureTypeMapping(containerTypeTargetType, containerMappingName);
        containerFTMapping.setSourceType(containerType.getDefinition().getName().getLocalPart());
        // build FeatureTypeMapping for nested type
        TypeDefinition nestedFT = null;
        List<ChildContext> nestedFTPath = null;
        FeatureTypeMapping nestedFTMapping = null;
        if (chainConf != null) {
            nestedFT = chainConf.getNestedTypeTarget().getDefinition().getPropertyType();
            nestedFTPath = chainConf.getNestedTypeTarget().getPropertyPath();
            // remove last element
            nestedFTPath = nestedFTPath.subList(0, nestedFTPath.size() - 1);
            nestedFTMapping = context.getOrCreateFeatureTypeMapping(nestedFT, chainConf.getMappingName());
            nestedFTMapping.setSourceType(nestedType.getDefinition().getName().getLocalPart());
        } else {
            if (joinParameter.getTypes().size() > 2) {
                throw new IllegalArgumentException("If no feature chaining configuration is provided, only join between 2 types is supported");
            }
            // do your best to figure it out on your own... good luck!
            Collection<? extends Cell> propertyCells = alignment.getPropertyCells(typeCell);
            for (Cell propertyCell : propertyCells) {
                Property sourceProperty = AppSchemaMappingUtils.getSourceProperty(propertyCell);
                if (sourceProperty != null) {
                    TypeDefinition sourceType = sourceProperty.getDefinition().getDefinition().getParentType();
                    if (sourceType.getName().equals(nestedType.getDefinition().getName())) {
                        // source property belongs to nested type: determine
                        // target type
                        Property targetProperty = getTargetProperty(propertyCell);
                        // nestedFT =
                        // findOwningFeatureType(targetProperty.getDefinition());
                        nestedFT = findOwningType(targetProperty.getDefinition(), context.getRelevantTargetTypes());
                        if (nestedFT != null && !nestedFT.getName().equals(containerTypeTargetType.getName())) {
                            // target property belongs to a feature type
                            // different from the already mapped one: build
                            // a new mapping
                            nestedFTPath = findOwningTypePath(targetProperty.getDefinition(), context.getRelevantTargetTypes());
                            nestedFTMapping = context.getOrCreateFeatureTypeMapping(nestedFT);
                            nestedFTMapping.setSourceType(nestedType.getDefinition().getName().getLocalPart());
                            // in the join
                            break;
                        } else if (isHRefAttribute(targetProperty.getDefinition().getDefinition())) {
                            // check if target property is a href attribute
                            Property hrefProperty = targetProperty;
                            List<ChildContext> hrefPropertyPath = hrefProperty.getDefinition().getPropertyPath();
                            List<ChildContext> hrefContainerPath = hrefPropertyPath.subList(0, hrefPropertyPath.size() - 1);
                            TypeDefinition hrefParentType = hrefProperty.getDefinition().getDefinition().getParentType();
                            // TypeDefinition childFT =
                            // findChildFeatureType(hrefParentType);
                            TypeDefinition childFT = AppSchemaMappingUtils.findChildType(hrefParentType, context.getRelevantTargetTypes());
                            if (childFT != null) {
                                nestedFTPath = hrefContainerPath;
                                nestedFTMapping = context.getOrCreateFeatureTypeMapping(childFT);
                                nestedFTMapping.setSourceType(nestedType.getDefinition().getName().getLocalPart());
                                // involved in the join
                                break;
                            }
                        }
                    }
                }
            }
        }
        // build join mapping
        if (nestedFTMapping != null && nestedFTPath != null) {
            AttributeMappingType containerJoinMapping = context.getOrCreateAttributeMapping(containerTypeTargetType, containerTypeTargetMappingName, nestedFTPath);
            containerJoinMapping.setTargetAttribute(mapping.buildAttributeXPath(containerTypeTargetType, nestedFTPath));
            // set isMultiple attribute
            PropertyDefinition targetPropertyDef = nestedFTPath.get(nestedFTPath.size() - 1).getChild().asProperty();
            if (AppSchemaMappingUtils.isMultiple(targetPropertyDef)) {
                containerJoinMapping.setIsMultiple(true);
            }
            AttributeExpressionMappingType containerSourceExpr = new AttributeExpressionMappingType();
            // join column extracted from join condition
            containerSourceExpr.setOCQL(baseProperty.getDefinition().getName().getLocalPart());
            containerSourceExpr.setLinkElement(getLinkElementValue(nestedFTMapping));
            String linkField = context.getUniqueFeatureLinkAttribute(nestedFT, nestedFTMapping.getMappingName());
            containerSourceExpr.setLinkField(linkField);
            containerJoinMapping.setSourceExpression(containerSourceExpr);
            AttributeMappingType nestedJoinMapping = new AttributeMappingType();
            AttributeExpressionMappingType nestedSourceExpr = new AttributeExpressionMappingType();
            // join column extracted from join condition
            nestedSourceExpr.setOCQL(joinProperty.getDefinition().getName().getLocalPart());
            nestedJoinMapping.setSourceExpression(nestedSourceExpr);
            nestedJoinMapping.setTargetAttribute(linkField);
            nestedFTMapping.getAttributeMappings().getAttributeMapping().add(nestedJoinMapping);
        }
        if (chainIdx == 0) {
            topMostMapping = containerFTMapping;
        }
    }
    return topMostMapping;
}

Example 94 with Cell

use of eu.esdihumboldt.hale.common.align.model.Cell in project hale by halestudio.

the class GenerateDuplicates method generateMapping.

private void generateMapping() {
    System.out.println("Indexing example cells...");
    // index all cells based on the target property name
    SetMultimap<String, Cell> exampleCells = HashMultimap.create();
    for (Cell cell : examples.getCells()) {
        if (cell.getTarget().size() == 1) {
            // only supports cells with one target
            EntityDefinition entityDef = CellUtil.getFirstEntity(cell.getTarget()).getDefinition();
            if (entityDef.getDefinition() instanceof PropertyDefinition) {
                if (ADE_NS.equals(entityDef.getDefinition().getName().getNamespaceURI())) {
                    exampleCells.put(entityDef.getDefinition().getName().getLocalPart(), cell);
                } else
                    System.out.println("WARNING: ignoring cell with non-ADE target property");
            } else
                System.out.println("WARNING: ignoring type cell");
        } else
            System.out.println("WARNING: ignoring cell with multiple or no targets");
    }
    // collect all ADE feature types
    List<TypeDefinition> featureTypes = BGISAppUtil.getADEFeatureTypes(targetSchema);
    // visit ADE properties and create cells
    System.out.println("Generating mapping from example cells for");
    String cellNote = MessageFormat.format("Generated through duplication of example cells on BGIS ADE feature types.\n" + "{0,date,medium}", new Date());
    DuplicateVisitor visitor = new DuplicateVisitor(exampleCells, cellNote);
    for (TypeDefinition type : featureTypes) {
        System.out.println(type.getDisplayName() + "...");
        visitor.accept(new TypeEntityDefinition(type, SchemaSpaceID.TARGET, null));
    }
    if (visitor.getCells().isEmpty()) {
        System.out.println("WARNING: no cells were created");
    } else {
        System.out.println(visitor.getCells().size() + " cells were created.");
    }
    // create alignment
    MutableAlignment align = new DefaultAlignment();
    for (MutableCell cell : visitor.getCells()) {
        align.addCell(cell);
    }
    this.alignment = align;
}

Example 95 with Cell

use of eu.esdihumboldt.hale.common.align.model.Cell in project hale by halestudio.

the class XsltGenerator method generateContainer.

/**
 * Generate a XSL fragment that is the root of transformed target files and
 * incorporates the results of type transformation that are store as
 * temporary documents in XSL variables.
 *
 * @param typeIds the identifiers of the type transformations, they are also
 *            the names of the variables holding the temporary documents
 * @param templateFile the file to write the fragment to
 * @param targetElements an empty map that is populated with variable names
 *            mapped to target element names
 * @throws IOException if an error occurs writing the template
 * @throws XMLStreamException if an error occurs writing XML content to the
 *             template
 */
protected void generateContainer(Set<String> typeIds, File templateFile, Map<String, QName> targetElements) throws XMLStreamException, IOException {
    // group typeIds by target type
    Multimap<TypeDefinition, String> groupedResults = HashMultimap.create();
    for (String typeId : typeIds) {
        Cell cell = cellIdentifiers.getObject(typeId);
        if (cell.getTransformationMode() == TransformationMode.active) {
            // only active cells get placed in the container
            Collection<? extends Entity> targetEntities = cell.getTarget().values();
            if (targetEntities.size() == 1) {
                TypeDefinition type = targetEntities.iterator().next().getDefinition().getType();
                groupedResults.put(type, typeId);
            } else {
                throw new IllegalStateException("Type cell may only have exactly one target type");
            }
        }
    }
    // generate container and integration of temporary documents
    writeContainerFragment(templateFile, groupedResults, targetElements);
}