Examples with ModifiableCell eu.esdihumboldt.hale.common.align.model.ModifiableCell used on opensource projects

Example 1 with ModifiableCell

use of eu.esdihumboldt.hale.common.align.model.ModifiableCell in project hale by halestudio.

the class AlignmentServiceImpl method setCellProperty.

/**
 * @see eu.esdihumboldt.hale.ui.service.align.AlignmentService#setCellProperty(java.lang.String,
 *      java.lang.String, java.lang.Object)
 */
@Override
public void setCellProperty(String cellId, String propertyName, Object property) {
    if (propertyName == null || property == null) {
        throw new IllegalArgumentException("Mandatory parameter is null");
    }
    Cell cell = getAlignment().getCell(cellId);
    if (cell instanceof ModifiableCell && (Cell.PROPERTY_DISABLE_FOR.equals(propertyName) || Cell.PROPERTY_ENABLE_FOR.equals(propertyName))) {
        boolean disable = Cell.PROPERTY_DISABLE_FOR.equals(propertyName);
        if (property instanceof Cell) {
            Cell other = (Cell) property;
            if (!AlignmentUtil.isTypeCell(other))
                throw new IllegalArgumentException();
            // This call may fail, if the cell was disabled in a base
            // alignment and someone tries to enable it again.
            ((ModifiableCell) cell).setDisabledFor(other, disable);
        } else
            throw new IllegalArgumentException();
        notifyCellsPropertyChanged(Arrays.asList(cell), propertyName);
    } else if (Cell.PROPERTY_TRANSFORMATION_MODE.equals(propertyName)) {
        // set the transformation mode
        if (cell instanceof ModifiableCell && property instanceof TransformationMode) {
            ModifiableCell modCell = (ModifiableCell) cell;
            modCell.setTransformationMode((TransformationMode) property);
            notifyCellsPropertyChanged(Arrays.asList(cell), propertyName);
        }
    } else if (cell instanceof MutableCell) {
        MutableCell mutableCell = (MutableCell) cell;
        if (Cell.PROPERTY_PRIORITY.equals(propertyName)) {
            if (property instanceof Priority) {
                Priority priority = (Priority) property;
                mutableCell.setPriority(priority);
            }
            if (property instanceof String) {
                String priorityStr = (String) property;
                Priority priority = Priority.valueOf(priorityStr);
                if (priority != null) {
                    mutableCell.setPriority(priority);
                } else {
                    throw new IllegalArgumentException();
                }
            }
            notifyCellsPropertyChanged(Arrays.asList(cell), propertyName);
        }
    } else {
        throw new IllegalArgumentException("No mutable cell by the given id found: " + cellId);
    }
}

Example 2 with ModifiableCell

use of eu.esdihumboldt.hale.common.align.model.ModifiableCell in project hale by halestudio.

the class DefaultAlignmentIOTest method testCellDisableSaveLoad.

/**
 * Tests cell disable save and load.
 *
 * @throws Exception if an error occurs
 */
@Test
public void testCellDisableSaveLoad() throws Exception {
    DefaultAlignment baseAlignment = new DefaultAlignment();
    MutableAlignment alignment = new DefaultAlignment();
    Schema schema = TestUtil.loadSchema(getClass().getResource("/testdata/simple/t1.xsd").toURI());
    Iterator<? extends TypeDefinition> iter = schema.getMappingRelevantTypes().iterator();
    TypeDefinition t = iter.next();
    if (!t.getName().getLocalPart().equals("T1")) {
        t = iter.next();
    }
    // generate base alignment
    DefaultCell cell1 = new DefaultCell();
    cell1.setTransformationIdentifier("trans1");
    ListMultimap<String, Type> source = ArrayListMultimap.create();
    source.put(null, new DefaultType(new TypeEntityDefinition(t, SchemaSpaceID.SOURCE, null)));
    cell1.setSource(source);
    ListMultimap<String, Type> target = ArrayListMultimap.create();
    target.put(null, new DefaultType(new TypeEntityDefinition(t, SchemaSpaceID.TARGET, null)));
    cell1.setTarget(target);
    DefaultCell cell2 = new DefaultCell();
    cell2.setTransformationIdentifier("trans2");
    List<ChildContext> childContext2 = new ArrayList<ChildContext>();
    PropertyDefinition child2 = DefinitionUtil.getChild(t, new QName("a1")).asProperty();
    childContext2.add(new ChildContext(child2));
    ListMultimap<String, Property> source2 = ArrayListMultimap.create();
    source2.put(null, new DefaultProperty(new PropertyEntityDefinition(t, childContext2, SchemaSpaceID.SOURCE, null)));
    cell2.setSource(source2);
    ListMultimap<String, Property> target2 = ArrayListMultimap.create();
    target2.put(null, new DefaultProperty(new PropertyEntityDefinition(t, childContext2, SchemaSpaceID.TARGET, null)));
    cell2.setTarget(target2);
    DefaultCell cell3 = new DefaultCell();
    cell3.setTransformationIdentifier("trans3");
    List<ChildContext> childContext3 = new ArrayList<ChildContext>();
    PropertyDefinition child3 = DefinitionUtil.getChild(t, new QName("b1")).asProperty();
    childContext3.add(new ChildContext(child3));
    ListMultimap<String, Property> source3 = ArrayListMultimap.create();
    source3.put(null, new DefaultProperty(new PropertyEntityDefinition(t, childContext3, SchemaSpaceID.SOURCE, null)));
    cell3.setSource(source3);
    ListMultimap<String, Property> target3 = ArrayListMultimap.create();
    target3.put(null, new DefaultProperty(new PropertyEntityDefinition(t, childContext3, SchemaSpaceID.TARGET, null)));
    cell3.setTarget(target3);
    baseAlignment.addCell(cell1);
    baseAlignment.addCell(cell2);
    String baseDisableCellId = cell2.getId();
    baseAlignment.addCell(cell3);
    String extendedDisableCellId = cell3.getId();
    assertEquals(3, baseAlignment.getCells().size());
    Cell typeCell = baseAlignment.getTypeCells().iterator().next();
    assertEquals(2, baseAlignment.getPropertyCells(typeCell).size());
    // test disable, it should not be with the related property cells
    cell2.setDisabledFor(cell1, true);
    assertEquals(1, baseAlignment.getPropertyCells(typeCell).size());
    assertTrue(cell2.getDisabledFor().contains(cell1.getId()));
    cell2.setDisabledFor(cell1, false);
    assertFalse(cell2.getDisabledFor().contains(cell1.getId()));
    cell2.setDisabledFor(cell1, true);
    assertEquals(1, baseAlignment.getPropertyCells(typeCell).size());
    // save base alignment
    File baseAlignmentFile = tmp.newFile("alignment_base.xml");
    System.out.println(baseAlignmentFile.getAbsolutePath());
    saveAlignment(baseAlignment, new BufferedOutputStream(new FileOutputStream(baseAlignmentFile)));
    // load base alignment
    MutableAlignment baseAlignment2 = loadAlignment(new FileInputStream(baseAlignmentFile), schema, schema);
    typeCell = baseAlignment2.getTypeCells().iterator().next();
    assertEquals(3, baseAlignment2.getCells().size());
    // test again that it is still disabled
    assertEquals(1, baseAlignment2.getPropertyCells(typeCell).size());
    // disable the remaining enabled cell in extended alignment
    addBaseAlignment(alignment, baseAlignmentFile.toURI(), schema, schema);
    assertEquals(1, alignment.getBaseAlignments().size());
    String usedPrefix = alignment.getBaseAlignments().keySet().iterator().next();
    File alignmentFile = tmp.newFile("alignment_extended.xml");
    // check cells
    typeCell = alignment.getTypeCells().iterator().next();
    assertEquals(3, alignment.getCells().size());
    assertEquals(1, alignment.getPropertyCells(typeCell).size());
    // disable remaining cell
    ((ModifiableCell) alignment.getPropertyCells(typeCell, false, false).iterator().next()).setDisabledFor(typeCell, true);
    assertEquals(0, alignment.getPropertyCells(typeCell).size());
    // save / load extended alignment
    System.out.println(alignmentFile.getAbsolutePath());
    saveAlignment(alignment, new BufferedOutputStream(new FileOutputStream(alignmentFile)));
    // load extended
    MutableAlignment alignment2 = loadAlignment(new FileInputStream(alignmentFile), schema, schema);
    typeCell = alignment2.getTypeCells().iterator().next();
    // test disabled again
    assertEquals(3, alignment2.getCells().size());
    // test again that it is still disabled
    assertEquals(0, alignment2.getPropertyCells(typeCell).size());
    // more specifically test whether the disables come from base alignment
    // or extended alignment
    Cell baseDisableCell = alignment2.getCell(usedPrefix + ":" + baseDisableCellId);
    Cell extendedDisableCell = alignment2.getCell(usedPrefix + ":" + extendedDisableCellId);
    assertTrue(baseDisableCell instanceof BaseAlignmentCell);
    assertEquals(1, baseDisableCell.getDisabledFor().size());
    assertEquals(1, ((BaseAlignmentCell) baseDisableCell).getBaseDisabledFor().size());
    assertEquals(0, ((BaseAlignmentCell) baseDisableCell).getAdditionalDisabledFor().size());
    assertTrue(extendedDisableCell instanceof BaseAlignmentCell);
    assertEquals(1, extendedDisableCell.getDisabledFor().size());
    assertEquals(0, ((BaseAlignmentCell) extendedDisableCell).getBaseDisabledFor().size());
    assertEquals(1, ((BaseAlignmentCell) extendedDisableCell).getAdditionalDisabledFor().size());
}

Example 3 with ModifiableCell

use of eu.esdihumboldt.hale.common.align.model.ModifiableCell in project hale by halestudio.

the class AbstractBaseAlignmentLoader method applyModifiers.

/**
 * Apply modifiers on the alignment.
 *
 * @param alignment the alignment to work on
 * @param modifiers the modifiers to apply
 * @param prefixMapping the mapping of prefixes (see
 *            {@link #getCell(Alignment, String, String, Map, IOReporter)})
 * @param defaultPrefix the default prefix (may be <code>null</code>) (see
 *            {@link #getCell(Alignment, String, String, Map, IOReporter)})
 * @param base whether the added modifiers are from a base alignment or the
 *            main alignment
 * @param reporter the I/O reporter to report any errors to, may be
 *            <code>null</code>
 */
private void applyModifiers(Alignment alignment, Collection<M> modifiers, Map<String, String> prefixMapping, String defaultPrefix, boolean base, IOReporter reporter) {
    for (M modifier : modifiers) {
        Cell cell = getCell(alignment, getModifiedCell(modifier), defaultPrefix, prefixMapping, reporter);
        if (cell == null)
            continue;
        // disabledFor
        for (String disabledForId : getDisabledForList(modifier)) {
            Cell other = getCell(alignment, disabledForId, defaultPrefix, prefixMapping, reporter);
            if (other == null)
                continue;
            else if (!AlignmentUtil.isTypeCell(other)) {
                reporter.warn(new IOMessageImpl("A cell referenced in disable-for is not a type cell.", null));
                continue;
            } else if (!alignment.getPropertyCells(other, true, false).contains(cell)) {
                reporter.warn(new IOMessageImpl("A cell referenced in disable-for does not contain the cell that gets modified.", null));
                continue;
            }
            // so it has to be a BaseAlignmentCell
            if (base)
                ((BaseAlignmentCell) cell).setBaseDisabledFor(other, true);
            else
                ((ModifiableCell) cell).setDisabledFor(other, true);
        }
        // transformation mode
        TransformationMode mode = getTransformationMode(modifier);
        if (mode != null) {
            if (base)
                ((BaseAlignmentCell) cell).setBaseTransformationMode(mode);
            else
                ((ModifiableCell) cell).setTransformationMode(mode);
        }
    // XXX handle additional properties
    }
}