Examples with DefaultInstanceCollection eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection used on opensource projects

Example 1 with DefaultInstanceCollection

use of eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection in project hale by halestudio.

the class XLSInstanceReader method execute.

@Override
protected IOReport execute(ProgressIndicator progress, IOReporter reporter) throws IOProviderConfigurationException, IOException {
    boolean skipFirst = getParameter(CommonSchemaConstants.PARAM_SKIP_FIRST_LINE).as(Boolean.class);
    // first sheet as default
    sheetNum = getParameter(InstanceTableIOConstants.SHEET_INDEX).as(int.class, 0);
    instances = new DefaultInstanceCollection(new ArrayList<Instance>());
    try {
        // analyze the excel sheet to get all information
        analyser = new AnalyseXLSSchemaTable(getSource().getLocation(), sheetNum);
    } catch (Exception e) {
        reporter.error(new IOMessageImpl("Reading the excel sheet has failed", e));
        return reporter;
    }
    // get type definition of the schema
    type = getSourceSchema().getType(QName.valueOf(getParameter(CommonSchemaConstants.PARAM_TYPENAME).as(String.class)));
    // get property definition
    propAr = type.getChildren().toArray(new PropertyDefinition[type.getChildren().size()]);
    Collection<List<String>> rows = analyser.getRows();
    // skip if first row is a header
    if (!skipFirst) {
        // otherwise first line is also an instance
        createInstanceCollection(analyser.getHeader(), reporter);
        line++;
    }
    // iterate over all rows to create the instances
    Iterator<List<String>> allRows = rows.iterator();
    while (allRows.hasNext()) {
        List<String> row = allRows.next();
        createInstanceCollection(row, reporter);
        line++;
    }
    reporter.setSuccess(true);
    return reporter;
}

Example 2 with DefaultInstanceCollection

use of eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection in project hale by halestudio.

the class SimplePartitionerTest method createCollection.

static InstanceCollection createCollection(int num) {
    Collection<Instance> instances = new ArrayList<>();
    for (int i = 0; i < num; i++) {
        instances.add(new DefaultInstance(null, null));
    }
    InstanceCollection res = new DefaultInstanceCollection(instances);
    return res;
}

Example 3 with DefaultInstanceCollection

use of eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection in project hale by halestudio.

the class InstanceBuilderReader method execute.

@Override
protected IOReport execute(ProgressIndicator progress, IOReporter reporter) throws IOProviderConfigurationException, IOException {
    progress.begin("Run instance builder", ProgressIndicator.UNKNOWN);
    try {
        CompilerConfiguration compilerConfiguration = new CompilerConfiguration();
        compilerConfiguration.setScriptBaseClass(DelegatingScript.class.getName());
        // Configure the GroovyShell and pass the compiler configuration.
        GroovyShell shell = new GroovyShell(getClass().getClassLoader(), new Binding(), compilerConfiguration);
        DelegatingScript script;
        try (InputStream in = getSource().getInput();
            InputStreamReader reader = new InputStreamReader(in, getCharset())) {
            script = (DelegatingScript) shell.parse(reader);
        }
        InstanceBuilder builder = new InstanceBuilder();
        // apply schema
        builder.setTypes(getSourceSchema());
        script.setDelegate(builder);
        Object res = script.run();
        if (res == null) {
            throw new IllegalStateException("Null returned by script");
        } else if (res instanceof InstanceCollection) {
            instances = (InstanceCollection) res;
        } else if (res instanceof Instance) {
            instances = new DefaultInstanceCollection(Collections.singleton((Instance) res));
        } else {
            throw new IllegalStateException("Unrecognised return type: " + res.getClass().getName());
        }
        reporter.setSuccess(true);
    } catch (Exception e) {
        reporter.setSuccess(false);
        reporter.error("Error running instance builder", e);
    } finally {
        progress.end();
    }
    return reporter;
}

Example 4 with DefaultInstanceCollection

use of eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection in project hale by halestudio.

the class AbstractDBTest method readAndCountInstances.

/**
 * Read the instances from the db, check if it is same as instances written
 * to the db.
 *
 * @param originalInstances instance created and written to db
 * @param schema schema read
 * @param gType the geometry type definition.
 * @return The count of instances which are equal to the original instances
 * @throws Exception if reading the instances fails.
 */
protected int readAndCountInstances(InstanceCollection originalInstances, Schema schema, TypeDefinition gType) throws Exception {
    InstanceCollection instancesRead = readInstances(schema).select(new TypeFilter(gType));
    List<Instance> originals = new DefaultInstanceCollection(originalInstances).toList();
    ResourceIterator<Instance> ri = instancesRead.iterator();
    int count = 0;
    try {
        while (ri.hasNext()) {
            Instance instance = ri.next();
            String error = InstanceUtil.checkInstance(instance, originals);
            assertNull(error, error);
            count++;
        }
    } finally {
        ri.close();
    }
    return count;
}

Example 5 with DefaultInstanceCollection

use of eu.esdihumboldt.hale.common.instance.model.impl.DefaultInstanceCollection in project hale by halestudio.

the class StreamGmlWriterTest method fillFeatureTest.

/**
 * Create a feature, fill it with values, write it as GML, validate the GML
 * and load the GML file again to compare the loaded values with the ones
 * that were written
 *
 * @param elementName the element name of the feature type to use, if
 *            <code>null</code> a random element will be used
 * @param targetSchema the schema to use, the first element will be used for
 *            the type of the feature
 * @param values the values to set on the feature
 * @param testName the name of the test
 * @param srsName the SRS name
 * @param skipValueTest if the check for equality shall be skipped
 * @param expectWriteFail if the GML writing is expected to fail
 * @param windingOrderParam winding order parameter or <code>null</code>
 * @return the validation report or the GML writing report if writing
 *         expected to fail
 * @throws Exception if any error occurs
 */
private IOReport fillFeatureTest(String elementName, URI targetSchema, Map<List<QName>, Object> values, String testName, String srsName, boolean skipValueTest, boolean expectWriteFail, EnumWindingOrderTypes windingOrderParam) throws Exception {
    // load the sample schema
    XmlSchemaReader reader = new XmlSchemaReader();
    reader.setSharedTypes(null);
    reader.setSource(new DefaultInputSupplier(targetSchema));
    IOReport schemaReport = reader.execute(null);
    assertTrue(schemaReport.isSuccess());
    XmlIndex schema = reader.getSchema();
    XmlElement element = null;
    if (elementName == null) {
        element = schema.getElements().values().iterator().next();
        if (element == null) {
            // $NON-NLS-1$
            fail("No element found in the schema");
        }
    } else {
        for (XmlElement candidate : schema.getElements().values()) {
            if (candidate.getName().getLocalPart().equals(elementName)) {
                element = candidate;
                break;
            }
        }
        if (element == null) {
            // $NON-NLS-1$ //$NON-NLS-2$
            fail("Element " + elementName + " not found in the schema");
        }
    }
    if (element == null) {
        throw new IllegalStateException();
    }
    // create feature
    MutableInstance feature = new DefaultInstance(element.getType(), null);
    // set some values
    for (Entry<List<QName>, Object> entry : values.entrySet()) {
        MutableGroup parent = feature;
        List<QName> properties = entry.getKey();
        for (int i = 0; i < properties.size() - 1; i++) {
            QName propertyName = properties.get(i);
            DefinitionGroup def = parent.getDefinition();
            Object[] vals = parent.getProperty(propertyName);
            if (vals != null && vals.length > 0) {
                Object value = vals[0];
                if (value instanceof MutableGroup) {
                    parent = (MutableGroup) value;
                } else {
                    MutableGroup child;
                    ChildDefinition<?> childDef = def.getChild(propertyName);
                    if (childDef.asProperty() != null || value != null) {
                        // create instance
                        child = new DefaultInstance(childDef.asProperty().getPropertyType(), null);
                    } else {
                        // create group
                        child = new DefaultGroup(childDef.asGroup());
                    }
                    if (value != null) {
                        // wrap value
                        ((MutableInstance) child).setValue(value);
                    }
                    parent = child;
                }
            }
        }
        parent.addProperty(properties.get(properties.size() - 1), entry.getValue());
    }
    InstanceCollection instances = new DefaultInstanceCollection(Collections.singleton(feature));
    // write to file
    InstanceWriter writer = new GmlInstanceWriter();
    if (windingOrderParam != null) {
        writer.setParameter(GeoInstanceWriter.PARAM_UNIFY_WINDING_ORDER, Value.of(windingOrderParam));
    }
    writer.setInstances(instances);
    DefaultSchemaSpace schemaSpace = new DefaultSchemaSpace();
    schemaSpace.addSchema(schema);
    writer.setTargetSchema(schemaSpace);
    // $NON-NLS-1$
    File outFile = File.createTempFile(testName, ".gml");
    writer.setTarget(new FileIOSupplier(outFile));
    if (windingOrderParam != null && windingOrderParam == EnumWindingOrderTypes.counterClockwise) {
        assertTrue(writer.getParameter(GeoInstanceWriter.PARAM_UNIFY_WINDING_ORDER).as(EnumWindingOrderTypes.class) == EnumWindingOrderTypes.counterClockwise);
    }
    // new LogProgressIndicator());
    IOReport report = writer.execute(null);
    if (expectWriteFail) {
        assertFalse("Writing the GML output should not be successful", report.isSuccess());
        return report;
    } else {
        assertTrue("Writing the GML output not successful", report.isSuccess());
    }
    List<? extends Locatable> validationSchemas = writer.getValidationSchemas();
    System.out.println(outFile.getAbsolutePath());
    System.out.println(targetSchema.toString());
    // if (!DEL_TEMP_FILES && Desktop.isDesktopSupported()) {
    // Desktop.getDesktop().open(outFile);
    // }
    IOReport valReport = validate(outFile.toURI(), validationSchemas);
    // load file
    InstanceCollection loaded = loadGML(outFile.toURI(), schema);
    ResourceIterator<Instance> it = loaded.iterator();
    try {
        assertTrue(it.hasNext());
        if (!skipValueTest) {
            Instance l = it.next();
            // test values
            for (Entry<List<QName>, Object> entry : values.entrySet()) {
                // XXX conversion?
                Object expected = entry.getValue();
                // String propertyPath = Joiner.on('.').join(Collections2.transform(entry.getKey(), new Function<QName, String>() {
                // 
                // @Override
                // public String apply(QName input) {
                // return input.toString();
                // }
                // }));
                // Collection<Object> propValues = PropertyResolver.getValues(
                // l, propertyPath, true);
                // assertEquals(1, propValues.size());
                // Object value = propValues.iterator().next();
                Collection<GeometryProperty<?>> geoms = GeometryUtil.getAllGeometries(l);
                assertEquals(1, geoms.size());
                Object value = geoms.iterator().next().getGeometry();
                if (expected instanceof Geometry && value instanceof Geometry) {
                    if (windingOrderParam == null || windingOrderParam == EnumWindingOrderTypes.noChanges) {
                        matchGeometries((Geometry) expected, (Geometry) value);
                    }
                    // Winding Order Test.
                    if (windingOrderParam != null) {
                        if (windingOrderParam == EnumWindingOrderTypes.counterClockwise) {
                            assertTrue(((Geometry) expected).getNumGeometries() == ((Geometry) value).getNumGeometries());
                            assertTrue(WindingOrder.isCounterClockwise((Geometry) value));
                        } else if (windingOrderParam == EnumWindingOrderTypes.clockwise) {
                            assertFalse(WindingOrder.isCounterClockwise((Geometry) value));
                        } else {
                            assertTrue(WindingOrder.isCounterClockwise((Geometry) value) == WindingOrder.isCounterClockwise((Geometry) expected));
                        }
                    } else {
                        // TODO check winding order is CCW
                        if (value instanceof Polygon || value instanceof MultiPolygon)
                            assertTrue(WindingOrder.isCounterClockwise((Geometry) value));
                    }
                } else {
                    assertEquals(expected.toString(), value.toString());
                }
            }
            assertFalse(it.hasNext());
        }
    } finally {
        it.close();
    }
    if (DEL_TEMP_FILES) {
        outFile.deleteOnExit();
    }
    return valReport;
}