Examples with IArticle eu.etaxonomy.cdm.model.reference.IArticle used on opensource projects

Example 1 with IArticle

use of eu.etaxonomy.cdm.model.reference.IArticle in project cdmlib by cybertaxonomy.

the class MarkupNomenclatureImport method handleCitationSpecific.

/**
 * Handles references used in the citation tag
 * @param appendix
 * @see #handleNonCitationSpecific(String, String, String, String, String, String, String, String)
 */
private Reference handleCitationSpecific(MarkupImportState state, String type, String authorStr, String titleStr, String titleCache, String volume, String issue, String edition, String editors, String pubName, String pages, String appendix, Map<String, String> refMap, XMLEvent parentEvent) {
    if (titleStr != null) {
        String message = "Currently it is not expected that a titleStr exists in a citation";
        fireWarningEvent(message, parentEvent, 4);
    }
    if (isBlank(volume) && isNotBlank(issue)) {
        String message = "Issue ('" + issue + "') exists but no volume";
        fireWarningEvent(message, parentEvent, 4);
        volume = issue;
    } else if (isNotBlank(issue)) {
        volume = volume + "(" + issue + ")";
    }
    RefType refType = defineRefTypeForCitation(type, volume, editors, authorStr, pubName, parentEvent);
    Reference reference;
    if (isNotBlank(appendix)) {
        pubName = pubName == null ? appendix : (pubName + " " + appendix).replaceAll("  ", " ");
    }
    if (refType == RefType.Article) {
        IArticle article = ReferenceFactory.newArticle();
        if (pubName != null) {
            IJournal journal = ReferenceFactory.newJournal();
            journal.setTitle(pubName);
            article.setInJournal(journal);
            article.setVolume(volume);
            if (isNotBlank(edition)) {
                String message = "Article must not have an edition.";
                fireWarningEvent(message, parentEvent, 4);
            }
        }
        reference = (Reference) article;
    } else if (refType == RefType.BookSection) {
        // Book Section
        reference = ReferenceFactory.newBookSection();
        IBook book = ReferenceFactory.newBook();
        reference.setInBook(book);
        book.setTitle(pubName);
        book.setVolume(volume);
        book.setEdition(edition);
        if (state.getConfig().isUseEditorAsInAuthorWhereNeeded()) {
            TeamOrPersonBase<?> inAuthor = createAuthor(state, editors);
            book.setAuthorship(inAuthor);
            editors = null;
        }
    } else if (refType == RefType.Book) {
        // Book
        reference = ReferenceFactory.newBook();
        reference.setTitle(pubName);
        reference.setVolume(volume);
        reference.setEdition(edition);
    } else if (refType == RefType.Generic) {
        // Generic - undefinable
        // String message = "Can't define the type of the reference. Use generic instead";
        // fireWarningEvent(message, parentEvent, 4);
        reference = ReferenceFactory.newGeneric();
        reference.setTitle(pubName);
        reference.setEdition(edition);
        // volume indicates an in-reference
        if (isNotBlank(volume)) {
            Reference partOf = ReferenceFactory.newGeneric();
            partOf.setVolume(volume);
            partOf.setInReference(reference);
            reference = partOf;
        }
    } else if (refType == RefType.LatestUsed) {
        Reference latestReference = state.getLatestReferenceInHomotype();
        if (latestReference == null) {
            String message = "No former reference available for incomplete citation";
            fireWarningEvent(message, parentEvent, 6);
            reference = ReferenceFactory.newGeneric();
        } else {
            if (latestReference.getInReference() != null) {
                reference = latestReference.clone();
            } else {
                String message = "Latest reference is not an in-reference. This is not yet handled.";
                fireWarningEvent(message, parentEvent, 6);
                reference = ReferenceFactory.newGeneric();
            }
        }
        reference.setVolume(volume);
        if (isNotBlank(edition)) {
            String message = "Edition not yet handled for incomplete citations";
            fireWarningEvent(message, parentEvent, 4);
        }
    } else {
        String message = "Unhandled reference type: %s";
        fireWarningEvent(String.format(message, refType.toString()), parentEvent, 8);
        reference = ReferenceFactory.newGeneric();
    }
    // author
    TeamOrPersonBase<?> author;
    if (isBlank(authorStr)) {
        if (refType != RefType.LatestUsed) {
            author = state.getLatestAuthorInHomotype();
            reference.setAuthorship(author);
        }
    } else {
        author = createAuthor(state, authorStr);
        state.setLatestAuthorInHomotype(author);
        reference.setAuthorship(author);
    }
    // title, titleCache
    handleTitlesInCitation(titleStr, titleCache, parentEvent, reference);
    // editors
    handleEditorsInCitation(edition, editors, reference, parentEvent);
    // pages
    handlePages(state, refMap, parentEvent, reference, pages);
    // state.getDeduplicationHelper(docImport).getExistingReference(state, reference);
    // remember reference for following citation
    state.setLatestReferenceInHomotype(reference);
    return reference;
}

Example 2 with IArticle

use of eu.etaxonomy.cdm.model.reference.IArticle in project cdmlib by cybertaxonomy.

the class ReferenceTest method testUnmarshalReference.

@Test
public void testUnmarshalReference() throws Exception {
    CdmDocumentBuilder cdmDocumentBuilder = new CdmDocumentBuilder();
    URI uri = new URI(URIEncoder.encode(this.getClass().getResource(resource).toString()));
    DataSet dataSet = cdmDocumentBuilder.unmarshal(DataSet.class, new InputStreamReader(this.getClass().getResourceAsStream(resource)), uri.toString());
    assertNotSame("Reference list should not be empty", 0, dataSet.getReferences().size());
    IArticle article = dataSet.getReferences().get(0);
    assertNotNull("Article must not be null", article);
    IJournal journal = dataSet.getReferences().get(1);
    assertNotNull("Journal must not be null", journal);
    assertEquals("Journal must equal Article.inJournal", journal, article.getInJournal());
}

Example 3 with IArticle

use of eu.etaxonomy.cdm.model.reference.IArticle in project cdmlib by cybertaxonomy.

the class ReferenceTest method testCastReferences.

@Test
public void testCastReferences() throws Exception {
    CdmDocumentBuilder cdmDocumentBuilder = new CdmDocumentBuilder();
    URI uri = new URI(URIEncoder.encode(this.getClass().getResource(resource).toString()));
    DataSet dataSet = cdmDocumentBuilder.unmarshal(DataSet.class, new InputStreamReader(this.getClass().getResourceAsStream(resource)), uri.toString());
    IArticle article = dataSet.getReferences().get(0);
    assertNotNull("Article must not be null", article);
    IJournal journal = ((Reference) article).castReferenceToJournal();
    assertEquals("Journal", journal.getType().name());
    IGeneric generic = ((Reference) journal).castReferenceToGeneric();
    assertEquals("Generic", generic.getType().name());
}

Example 4 with IArticle

use of eu.etaxonomy.cdm.model.reference.IArticle in project cdmlib by cybertaxonomy.

the class MatchStrategyFactoryTest method testParsedArticle.

@Test
public void testParsedArticle() throws MatchException {
    IParsedMatchStrategy matchStrategy = MatchStrategyFactory.NewParsedArticleInstance();
    Assert.assertNotNull(matchStrategy);
    IArticle fullArticle;
    IArticle parsedArticle;
    fullArticle = getMatchingFullArticle();
    parsedArticle = getDefaultParsedArticle();
    Assert.assertTrue("Having only paramters both have in common like author, book and date published " + "should match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    fullArticle.setDoi(DOI.fromString("10.1234/abc"));
    Assert.assertFalse("Full article having additional parameters should not match if parsed article has no identifying parameter like (abbrev)title or page", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // no match due to missing abbrev title match
    fullArticle = getDefaultFullArticle();
    Assert.assertFalse("Abbrev. title must be equal or null", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    parsedArticle.setAbbrevTitle(fullArticle.getAbbrevTitle());
    Assert.assertFalse("Still not match because pages are not equal (parsed is null)", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // FIXME in future this should not fail, but parsed articles never have really pages, they only have page or a page span in the parsed detail which is not the same as the pages of the article
    parsedArticle.setPages(fullArticle.getPages());
    Assert.assertFalse("Now they should match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // differing nom. title.
    parsedArticle.setAbbrevTitle("Wrong");
    Assert.assertFalse("Differing abbrev. title. should not match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // differing family
    parsedArticle = getDefaultParsedArticle();
    parsedArticle.setTitle("Wrong title");
    Assert.assertFalse("Differing title should not match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    fullArticle.setTitle(null);
    Assert.assertFalse("Title only for parsed book should not match. Wrong direction.", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // change author
    fullArticle = getMatchingFullArticle();
    parsedArticle = getDefaultParsedArticle();
    fullArticle.getAuthorship().setNomenclaturalTitleCache("Wrong", true);
    Assert.assertFalse("Differing author in nomencl. title should not match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
    // change author
    fullArticle = getMatchingFullArticle();
    parsedArticle = getDefaultParsedArticle();
    ((Team) fullArticle.getAuthorship()).getTeamMembers().get(0).setFamilyName("Changed");
    Assert.assertTrue("Full book family name author changed should still match", matchStrategy.invoke(parsedArticle, fullArticle).isSuccessful());
}

Example 5 with IArticle

use of eu.etaxonomy.cdm.model.reference.IArticle in project cdmlib by cybertaxonomy.

the class MatchStrategyFactoryTest method getMatchingFullArticle.

/**
 * Article with {@link #getDefaultFullTeam() full team},
 * {@link #getDefaultFullJournal() full journal} and date published
 */
private IArticle getMatchingFullArticle() {
    IArticle article = ReferenceFactory.newArticle();
    article.setAuthorship(getDefaultFullTeam());
    article.setInJournal(getDefaultFullJournal());
    article.setDatePublished(TimePeriodParser.parseStringVerbatim("1950"));
    ((Reference) article).updateCaches();
    return article;
}