Examples with DisplayFeaturesGenerator eu.isas.peptideshaker.utils.DisplayFeaturesGenerator used on opensource projects

Example 1 with DisplayFeaturesGenerator

use of eu.isas.peptideshaker.utils.DisplayFeaturesGenerator in project peptide-shaker by compomics.

the class SpectrumIdentificationPanel method spectrumTableMouseMoved.

// GEN-LAST:event_spectrumTableKeyReleased
/**
 * Changes the cursor into a hand cursor if the table cell contains an HTML
 * link. Or shows a tooltip with modification details is over the sequence
 * column.
 *
 * @param evt
 */
private void spectrumTableMouseMoved(java.awt.event.MouseEvent evt) {
    // GEN-FIRST:event_spectrumTableMouseMoved
    int row = spectrumTable.rowAtPoint(evt.getPoint());
    int column = spectrumTable.columnAtPoint(evt.getPoint());
    if (spectrumTable.getValueAt(row, column) != null) {
        if (column == spectrumTable.getColumn("Protein(s)").getModelIndex()) {
            String tempValue = (String) spectrumTable.getValueAt(row, column);
            if (tempValue.lastIndexOf("a href=") != -1) {
                this.setCursor(new java.awt.Cursor(java.awt.Cursor.HAND_CURSOR));
            } else {
                this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
            }
            spectrumTable.setToolTipText(null);
        } else if (column == spectrumTable.getColumn("Sequence").getModelIndex()) {
            this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
            int spectrumIndex = spectrumTable.convertRowIndexToModel(row);
            String spectrumTitle = peptideShakerGUI.getSpectrumProvider().getSpectrumTitles(fileSelected)[spectrumIndex];
            long spectrumMatchKey = SpectrumMatch.getKey(fileSelected, spectrumTitle);
            // check if we ought to show a tooltip with mod details
            DisplayFeaturesGenerator displayFeaturesGenerator = peptideShakerGUI.getDisplayFeaturesGenerator();
            SpectrumMatch spectrumMatch = identification.getSpectrumMatch(spectrumMatchKey);
            if (spectrumMatch.getBestPeptideAssumption() != null) {
                String tooltip = displayFeaturesGenerator.getPeptideModificationTooltipAsHtml(spectrumMatch);
                spectrumTable.setToolTipText(tooltip);
            } else if (spectrumMatch.getBestTagAssumption() != null) {
                TagAssumption tagAssumption = spectrumMatch.getBestTagAssumption();
                spectrumTable.setToolTipText(peptideShakerGUI.getDisplayFeaturesGenerator().getTagModificationTooltipAsHtml(tagAssumption.getTag()));
            } else {
                throw new IllegalArgumentException("No best match found for spectrum " + spectrumMatch.getKey() + ".");
            }
        } else {
            this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
            spectrumTable.setToolTipText(null);
        }
    }
}