Examples with JAXBPageTranscript eu.transkribus.core.model.beans.JAXBPageTranscript used on opensource projects

Example 1 with JAXBPageTranscript

use of eu.transkribus.core.model.beans.JAXBPageTranscript in project TranskribusCore by Transkribus.

the class DocExporter method exportDoc.

/**
 * Export current document with the provided parameters.
 * @param doc current document
 * @param pars export settings
 * @return directory to which the export files were written
 * @throws IOException
 * @throws IllegalArgumentException
 * @throws URISyntaxException
 * @throws JAXBException
 * @throws TransformerException
 */
public File exportDoc(TrpDoc doc, CommonExportPars pars) throws IOException, IllegalArgumentException, URISyntaxException, JAXBException, TransformerException {
    FimgStoreGetClient getter = null;
    FimgStoreUriBuilder uriBuilder = null;
    ImgType imgType = pars.getRemoteImgQuality() == null ? ImgType.orig : pars.getRemoteImgQuality();
    if (doc.isRemoteDoc()) {
        // FIXME fimagestore path should be read from docMd!
        getter = new FimgStoreGetClient("dbis-thure.uibk.ac.at", "f");
        final String scheme = pars.isUseHttps() ? "https" : "http";
        final int port = pars.isUseHttps() ? 443 : 80;
        uriBuilder = new FimgStoreUriBuilder(scheme, getter.getHost(), port, getter.getServerContext());
    }
    // create copy of object, as we alter it here while exporting
    TrpDoc doc2;
    doc2 = new TrpDoc(doc);
    // check and create output directory
    File outputDir = new File(pars.getDir());
    if (!pars.isDoOverwrite() && outputDir.exists()) {
        throw new IOException("File path already exists.");
    }
    outputDir.mkdir();
    // decide where to put the images
    final File imgOutputDir;
    if (pars.isUseOcrMasterDir()) {
        imgOutputDir = new File(outputDir.getAbsolutePath() + File.separatorChar + LocalDocConst.OCR_MASTER_DIR);
        imgOutputDir.mkdir();
    } else {
        imgOutputDir = outputDir;
    }
    File pageOutputDir = null, altoOutputDir = null;
    // check PAGE export settings and create output directory
    String pageDirName = pars.getPageDirName();
    if (pars.isDoExportPageXml() && !StringUtils.isEmpty(pageDirName)) {
        pageOutputDir = new File(outputDir.getAbsolutePath() + File.separatorChar + pageDirName);
        if (pageOutputDir.mkdir()) {
            logger.debug("pageOutputDir created successfully ");
        } else {
            logger.debug("pageOutputDir could not be created!");
        }
    } else {
        // if pageDirName is not set, export the PAGE XMLs to imgOutputDir
        pageOutputDir = imgOutputDir;
    }
    // check Alto export settings and create output directory
    AltoExporter altoEx = new AltoExporter();
    if (pars.isDoExportAltoXml()) {
        altoOutputDir = altoEx.createAltoOuputDir(doc2, outputDir.getAbsolutePath());
    }
    // check and write metadata
    if (doc2.getMd() != null) {
        File fileOut = new File(outputDir.getAbsolutePath() + File.separatorChar + LocalDocConst.METADATA_FILENAME);
        try {
            JaxbUtils.marshalToFile(doc2.getMd(), fileOut);
        } catch (JAXBException e) {
            throw new IOException("Could not marshal metadata to file.", e);
        }
    }
    List<TrpPage> pages = doc2.getPages();
    Set<Integer> pageIndices = pars.getPageIndices(doc.getNPages());
    // do export for all defined pages
    for (int i = 0; i < pages.size(); ++i) {
        if (pageIndices != null && !pageIndices.contains(i)) {
            continue;
        }
        TrpPage p = pages.get(i);
        File imgFile = null, xmlFile = null, altoFile = null;
        URL imgUrl = p.getUrl();
        final String baseFileName = ExportFilePatternUtils.buildBaseFileName(pars.getFileNamePattern(), p);
        final String imgExt = "." + FilenameUtils.getExtension(p.getImgFileName());
        final String xmlExt = ".xml";
        // gather remote files and export document
        if (doc2.isRemoteDoc()) {
            if (pars.isDoWriteImages()) {
                final String msg = "Downloading " + imgType.toString() + " image for page nr. " + p.getPageNr();
                logger.debug(msg);
                updateStatus(msg);
                final URI imgUri = uriBuilder.getImgUri(p.getKey(), imgType);
                imgFile = getter.saveFile(imgUri, imgOutputDir.getAbsolutePath(), baseFileName + imgExt);
                p.setUrl(imgFile.toURI().toURL());
                p.setKey(null);
            }
            if (pars.isDoExportPageXml()) {
                // old
                // TrpTranscriptMetadata t = p.getCurrentTranscript();
                /*
					 * new: to get the previously stored chosen version
					 */
                TrpTranscriptMetadata transcriptMd;
                JAXBPageTranscript transcript = cache.getPageTranscriptAtIndex(i);
                // set up transcript metadata
                if (transcript == null) {
                    transcriptMd = p.getCurrentTranscript();
                    logger.warn("Have to unmarshall transcript in DocExporter for transcript " + transcriptMd + " - should have been built before using ExportUtils::storePageTranscripts4Export!");
                    transcript = new JAXBPageTranscript(transcriptMd);
                    transcript.build();
                } else {
                    transcriptMd = transcript.getMd();
                }
                URL xmlUrl = transcriptMd.getUrl();
                if (pars.isExportTranscriptMetadata()) {
                    MetadataType md = transcript.getPage().getPcGtsType().getMetadata();
                    if (md == null) {
                        throw new JAXBException("Transcript does not contain a metadata element: " + transcriptMd);
                    }
                    String imgUrlStr = CoreUtils.urlToString(imgUrl);
                    String xmlUrlStr = CoreUtils.urlToString(xmlUrl);
                    String status = transcriptMd.getStatus() == null ? null : transcriptMd.getStatus().toString();
                    TranskribusMetadataType tmd = new TranskribusMetadataType();
                    tmd.setDocId(doc.getId());
                    tmd.setPageId(p.getPageId());
                    tmd.setPageNr(p.getPageNr());
                    tmd.setTsid(transcriptMd.getTsId());
                    tmd.setStatus(status);
                    tmd.setUserId(transcriptMd.getUserId());
                    tmd.setImgUrl(imgUrlStr);
                    tmd.setXmlUrl(xmlUrlStr);
                    tmd.setImageId(p.getImageId());
                    md.setTranskribusMetadata(tmd);
                }
                // write transcript to file
                xmlFile = new File(FilenameUtils.normalizeNoEndSeparator(pageOutputDir.getAbsolutePath()) + File.separator + baseFileName + xmlExt);
                logger.debug("PAGE XMl output file: " + xmlFile.getAbsolutePath());
                transcript.write(xmlFile);
                // old code: save file by just downloading to disk
                // xmlFile = getter.saveFile(transcriptMd.getUrl().toURI(), pageOutputDir.getAbsolutePath(), baseFileName + xmlExt);
                // make sure (for other exports) that the transcript that is exported is the only one set in the transcripts list of TrpPage
                p.getTranscripts().clear();
                TrpTranscriptMetadata tCopy = new TrpTranscriptMetadata(transcriptMd, p);
                tCopy.setUrl(xmlFile.toURI().toURL());
                p.getTranscripts().add(tCopy);
            }
        } else {
            updateStatus("Copying local files for page nr. " + p.getPageNr());
            // copy local files during export
            if (pars.isDoWriteImages()) {
                imgFile = LocalDocWriter.copyImgFile(p, p.getUrl(), imgOutputDir.getAbsolutePath(), baseFileName + imgExt);
            }
            if (pars.isDoExportPageXml()) {
                xmlFile = LocalDocWriter.copyTranscriptFile(p, pageOutputDir.getAbsolutePath(), baseFileName + xmlExt, cache);
            }
        }
        // export alto:
        if (pars.isDoExportAltoXml()) {
            altoFile = altoEx.exportAltoFile(p, baseFileName + xmlExt, altoOutputDir, pars.isSplitIntoWordsInAltoXml());
        }
        if (imgFile != null)
            logger.debug("Written image file " + imgFile.getAbsolutePath());
        if (xmlFile != null) {
            logger.debug("Written transcript xml file " + xmlFile.getAbsolutePath());
        } else {
            logger.warn("No transcript was exported for page ");
        }
        if (altoFile != null) {
            logger.debug("Written ALTO xml file " + altoFile.getAbsolutePath());
        } else {
            logger.warn("No alto was exported for page ");
        }
        setChanged();
        notifyObservers(Integer.valueOf(p.getPageNr()));
    }
    if (pars.isDoWriteMets()) {
        // load the exported doc from its new location
        // FIXME this does not work for export of PAGE XMLs only!
        // final TrpDoc localDoc = LocalDocReader.load(outputDir.getAbsolutePath(), false);
        // set local folder or else TrpMetsBuilder will treat this as remote doc!
        doc2.getMd().setLocalFolder(outputDir);
        // write mets with file pointers to local files
        Mets mets = TrpMetsBuilder.buildMets(doc2, pars.isDoExportPageXml(), pars.isDoExportAltoXml(), pars.isDoWriteImages(), pageIndices);
        File metsFile = new File(outputDir.getAbsolutePath() + File.separator + TrpMetsBuilder.METS_FILE_NAME);
        try {
            JaxbUtils.marshalToFile(mets, metsFile, TrpDocMetadata.class);
        } catch (JAXBException e) {
            throw new IOException("Could not marshal METS to file!", e);
        }
    }
    return outputDir;
}

Example 2 with JAXBPageTranscript

use of eu.transkribus.core.model.beans.JAXBPageTranscript in project TranskribusCore by Transkribus.

the class ATeiBuilder method getPcGtsTypeForPage.

// protected abstract void setTextRegion(TextRegionType r, int pageNr);
protected PcGtsType getPcGtsTypeForPage(TrpPage p) throws JAXBException {
    PcGtsType pc;
    if (transcrBuffer.containsKey(p.getPageNr())) {
        pc = transcrBuffer.get(p.getPageNr());
    } else {
        TrpTranscriptMetadata tMd = p.getCurrentTranscript();
        try {
            JAXBPageTranscript tr = new JAXBPageTranscript(tMd);
            tr.build();
            pc = tr.getPageData();
        } catch (IOException je) {
            throw new JAXBException("Could not unmarshal page " + p.getPageNr(), je);
        }
        transcrBuffer.put(p.getPageNr(), pc);
    }
    return pc;
}

Example 3 with JAXBPageTranscript

use of eu.transkribus.core.model.beans.JAXBPageTranscript in project TranskribusCore by Transkribus.

the class PdfExporter method export.

public File export(final TrpDoc doc, final String path, Set<Integer> pageIndices, final boolean useWordLevel, final boolean addTextPages, final boolean imagesOnly, final boolean highlightTags, final boolean doBlackening, boolean createTitle, ExportCache cache) throws DocumentException, MalformedURLException, IOException, JAXBException, URISyntaxException, InterruptedException {
    if (doc == null) {
        throw new IllegalArgumentException("TrpDoc is null!");
    }
    if (path == null) {
        throw new IllegalArgumentException("path is null!");
    }
    if (cache == null) {
        cache = new ExportCache();
    }
    // if(startPage == null || startPage < 1) startPage = 1;
    // final int nrOfPages = doc.getPages().size();
    // if(endPage == null || endPage > nrOfPages+1) endPage = nrOfPages;
    // 
    // if(startPage > endPage){
    // throw new IllegalArgumentException("Start page must be smaller than end page!");
    // }
    File pdfFile = new File(path);
    TrpPdfDocument pdf = new TrpPdfDocument(pdfFile, useWordLevel, highlightTags, doBlackening, createTitle);
    setChanged();
    notifyObservers("Creating PDF document...");
    boolean onePagePrinted = false;
    // for(int i = startPage-1; i <= endPage-1; i++){
    for (int i = 0; i < doc.getPages().size(); ++i) {
        if (pageIndices != null && !pageIndices.contains(i))
            continue;
        logger.info("Processing page " + (i + 1));
        TrpPage p = doc.getPages().get(i);
        URL imgUrl = p.getUrl();
        /*
			 * md is only needed for getting resolution because in the image it may be missing
			 * But if it is a local doc we have to try to get from img because md is null
			 */
        FimgStoreImgMd md = null;
        if (doc.isRemoteDoc()) {
            FimgStoreGetClient getter = new FimgStoreGetClient(p.getUrl());
            md = (FimgStoreImgMd) getter.getFileMd(p.getKey());
        }
        URL xmlUrl = p.getCurrentTranscript().getUrl();
        logger.debug("output with tags " + highlightTags);
        // PcGtsType pc = PageXmlUtils.unmarshal(xmlUrl);
        // should be the same as above
        JAXBPageTranscript pt = null;
        if (cache != null) {
            pt = cache.getPageTranscriptAtIndex(i);
        }
        PcGtsType pc;
        if (pt != null) {
            pc = pt.getPageData();
        } else {
            pc = PageXmlUtils.unmarshal(xmlUrl);
        }
        if (!onePagePrinted) {
            // add first page and previously add a title page with doc metadata and editorial declarations (if this option is set)
            pdf.addPage(imgUrl, doc, pc, addTextPages, imagesOnly, md, doBlackening, cache);
            onePagePrinted = true;
        } else {
            pdf.addPage(imgUrl, null, pc, addTextPages, imagesOnly, md, doBlackening, cache);
        }
        setChanged();
        notifyObservers(Integer.valueOf(i + 1));
        if (cancel) {
            pdf.close();
            File file = new File(path);
            if (!file.delete()) {
                throw new IOException("Could not delete the incomplete PDF file during export cancel");
            }
            throw new InterruptedException("Export canceled by the user");
        // break;
        }
    }
    if (highlightTags) {
        pdf.addTags(doc, pageIndices, useWordLevel, cache);
    }
    pdf.close();
    setChanged();
    notifyObservers("PDF written at: " + path);
    logger.info("PDF written at: " + path);
    return pdfFile;
}

Example 4 with JAXBPageTranscript

use of eu.transkribus.core.model.beans.JAXBPageTranscript in project TranskribusCore by Transkribus.

the class TrpRtfBuilder method writeRtfForDoc.

public static void writeRtfForDoc(TrpDoc doc, boolean wordBased, boolean writeTags, boolean doBlackening, File file, Set<Integer> pageIndices, IProgressMonitor monitor, ExportCache cache) throws JAXBException, IOException {
    exportTags = writeTags;
    tagnames = cache.getSelectedTags();
    TrpRtfBuilder.doBlackening = doBlackening;
    /*
		 * get all names of tags
		 */
    // tagnames = CustomTagFactory.getRegisteredTagNames();
    Rtf rtf = Rtf.rtf();
    List<TrpPage> pages = doc.getPages();
    int totalPages = pageIndices == null ? pages.size() : pageIndices.size();
    if (monitor != null) {
        monitor.beginTask("Exporting to RTF", totalPages);
    }
    int c = 0;
    for (int i = 0; i < pages.size(); ++i) {
        if (pageIndices != null && !pageIndices.contains(i))
            continue;
        if (monitor != null) {
            if (monitor.isCanceled()) {
                logger.debug("RTF export cancelled!");
                return;
            }
            monitor.subTask("Processing page " + (c + 1));
        }
        TrpPage page = pages.get(i);
        TrpTranscriptMetadata md = page.getCurrentTranscript();
        JAXBPageTranscript tr = new JAXBPageTranscript(md);
        tr.build();
        TrpPageType trpPage = tr.getPage();
        logger.debug("writing rtf for page " + (i + 1) + "/" + doc.getNPages());
        // rtf().header(color( 204, 0, 0 ).at( 0 ),
        // color( 0, 0xff, 0 ).at( 1 ),
        // color( 0, 0, 0xff ).at( 2 ),
        // font( "Calibri" ).at( 0 ) );
        // RtfHeaderColor color = RtfHeaderColor.color(0xff, 0, 0);
        rtf.header(color(204, 0, 0).at(0), color(0, 0xff, 0).at(1)).section(getRtfParagraphsForTranscript(trpPage, wordBased));
        ++c;
        if (monitor != null) {
            monitor.worked(c);
        }
    }
    // write tags at end of last page
    if (exportTags) {
        // RtfText headline = RtfText.text("Person names in this document (amount of found persons: " + persons.size() + ")", "\n");
        /*
			 * for all different tagnames:
			 * find all custom tags in doc
			 * create list and 
			 */
        ArrayList<RtfPara> tagParas = new ArrayList<RtfPara>();
        // tagnames = all user choosen tags via export dialog
        for (String currTagname : tagnames) {
            // logger.debug("curr tagname " + currTagname);
            // get all custom tags with currTagname and text
            HashMap<CustomTag, String> allTagsOfThisTagname = cache.getTags(currTagname);
            if (allTagsOfThisTagname.size() > 0) {
                tagParas.add(RtfPara.p(RtfText.text(RtfText.underline(currTagname + " tags in this document: " + allTagsOfThisTagname.size()))));
                // ArrayList<RtfText> tagTexts = new ArrayList<RtfText>();
                Collection<String> valueSet = allTagsOfThisTagname.values();
                RtfText[] tagTexts = new RtfText[valueSet.size()];
                int l = 0;
                for (String currEntry : valueSet) {
                    tagTexts[l++] = RtfText.text(currEntry.concat("\n"));
                // logger.debug("tag value is " + currEntry);
                }
                tagParas.add(RtfPara.p(tagTexts));
            }
        }
        // int parSize = getParsNumber();
        // int k = 0;
        // 
        // if (persons.size() > 0){
        // logger.debug("k is " + k);
        // List<String> newPersonList = new ArrayList<String>(new HashSet<String>(persons));
        // tagParas[k++]=RtfPara.p(RtfText.text("Person names in this document (amount of found persons: " + newPersonList.size() + ")", "\n"));
        // logger.debug("k is " + k);
        // //rtf.p("Person names in this document (amount of found persons: " + persons.size() + ")", "\n");
        // //to make the list contain only unique values
        // 
        // RtfText[] personTexts = new RtfText[newPersonList.size()];
        // for (int j=0; j<newPersonList.size(); ++j) {
        // personTexts[j] = RtfText.text(newPersonList.get(j), "\n");
        // logger.debug("person is " + newPersonList.get(j));
        // }
        // tagParas[k++] = RtfPara.p(personTexts);
        // }
        // 
        // if (places.size() > 0){
        // List<String> newPlaceList = new ArrayList<String>(new HashSet<String>(places));
        // tagParas[k++]=RtfPara.p(RtfText.text("Places in this document (amount of found places " + newPlaceList.size() + ")", "\n"));
        // 
        // RtfText[] placeTexts = new RtfText[newPlaceList.size()];
        // for (int j=0; j<newPlaceList.size(); ++j) {
        // //RtfText.color(0, "red");
        // placeTexts[j] = RtfText.color(0, newPlaceList.get(j).concat("\n"));
        // logger.debug("place is " + newPlaceList.get(j));
        // }
        // RtfPara par2 = RtfPara.p(placeTexts);
        // tagParas[k++] = par2;
        // }
        // 
        // if(addresses.size() > 0){
        // List<String> newAddressList = new ArrayList<String>(new HashSet<String>(addresses));
        // tagParas[k++]=RtfPara.p(RtfText.text("Addresses in this document (amount of found addresses " + newAddressList.size() + ")", "\n"));
        // 
        // RtfText[] addresseTexts = new RtfText[newAddressList.size()];
        // for (int j=0; j<newAddressList.size(); ++j) {
        // addresseTexts[j] = RtfText.text(newAddressList.get(j), "\n");
        // logger.debug("addresse is " + newAddressList.get(j));
        // }
        // RtfPara par3 = RtfPara.p(addresseTexts);
        // tagParas[k++] = par3;
        // }
        // rtf.section(par3);
        rtf.header(color(204, 0, 0).at(0)).section(tagParas);
    }
    rtf.out(new FileWriter(file));
    logger.info("wrote rtf to: " + file.getAbsolutePath());
}

Example 5 with JAXBPageTranscript

use of eu.transkribus.core.model.beans.JAXBPageTranscript in project TranskribusCore by Transkribus.

the class TrpRtfBuilder method writeRtfForDoc.

public static void writeRtfForDoc(TrpDoc doc, boolean wordBased, File file, Set<Integer> pageIndices, IProgressMonitor monitor) throws JAXBException, IOException {
    Rtf rtf = Rtf.rtf();
    List<TrpPage> pages = doc.getPages();
    int totalPages = pageIndices == null ? pages.size() : pageIndices.size();
    if (monitor != null) {
        monitor.beginTask("Exporting to RTF", totalPages);
    }
    int c = 0;
    for (int i = 0; i < pages.size(); ++i) {
        if (pageIndices != null && !pageIndices.contains(i))
            continue;
        if (monitor != null) {
            if (monitor.isCanceled()) {
                logger.debug("RTF export cancelled!");
                return;
            }
            monitor.subTask("Processing page " + (c + 1));
        }
        TrpPage page = pages.get(i);
        TrpTranscriptMetadata md = page.getCurrentTranscript();
        JAXBPageTranscript tr = new JAXBPageTranscript(md);
        tr.build();
        TrpPageType trpPage = tr.getPage();
        logger.debug("writing rtf for page " + (i + 1) + "/" + doc.getNPages());
        rtf.section(getRtfParagraphsForTranscript(trpPage, wordBased));
        ++c;
        if (monitor != null) {
            monitor.worked(c);
        }
    }
    rtf.out(new FileWriter(file));
    logger.info("wrote rtf to: " + file.getAbsolutePath());
}