Examples with IChromosomeType forestry.api.genetics.IChromosomeType used on opensource projects

Example 16 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class IsolatorLogic method onFinishTask.

@Override
protected void onFinishTask() {
    super.onFinishTask();
    final Random rand = this.getMachine().getWorld().rand;
    MachineUtil util = this.getUtil();
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(util.getStack(Isolator.SLOT_TARGET));
    if (root == null) {
        return;
    }
    final IIndividual individual = root.getMember(util.getStack(Isolator.SLOT_TARGET));
    if (individual == null) {
        return;
    }
    IChromosomeType[] karyotype = root.getKaryotype();
    IChromosomeType chromosome = karyotype[rand.nextInt(karyotype.length)];
    IGenome genome = individual.getGenome();
    IAllele allele = rand.nextBoolean() ? genome.getActiveAllele(chromosome) : genome.getInactiveAllele(chromosome);
    Gene gene = Gene.create(allele, chromosome, root);
    final ItemStack serum = ItemSequence.create(gene);
    util.setStack(Isolator.SLOT_RESULUT, serum);
    util.decreaseStack(Isolator.SLOT_SEQUENCER_VIAL, 1);
    if (rand.nextFloat() < TARGET_LOSS_CHANCE) {
        util.decreaseStack(Isolator.SLOT_TARGET, 1);
    }
    util.drainTank(Isolator.TANK_ETHANOL, ETHANOL_PER_PROCESS);
}

Example 17 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class InoculatorRecipeMaker method create.

public static List<InoculatorRecipeWrapper> create() {
    List<InoculatorRecipeWrapper> recipes = new ArrayList<>();
    for (IBreedingSystem system : Binnie.GENETICS.getActiveSystems()) {
        ISpeciesRoot root = system.getSpeciesRoot();
        IChromosomeType speciesChromosomeType = root.getSpeciesChromosomeType();
        IAllele[] defaultTemplate = root.getDefaultTemplate();
        IIndividual individual = root.templateAsIndividual(defaultTemplate);
        for (ISpeciesType speciesType : system.getActiveTypes()) {
            if (system.isDNAManipulable(speciesType)) {
                ItemStack memberStack = root.getMemberStack(individual, speciesType);
                memberStack.setItemDamage(OreDictionary.WILDCARD_VALUE);
                IAllele species = defaultTemplate[speciesChromosomeType.ordinal()];
                ItemStack serum = ItemSerum.create(new Gene(species, speciesChromosomeType, root));
                // set fully charged
                serum.setItemDamage(0);
                recipes.add(new InoculatorRecipeWrapper(serum, memberStack));
                recipes.add(new SplicerRecipeWrapper(serum, memberStack));
                ItemStack serumArray = ItemSerumArray.create(new Gene(species, speciesChromosomeType, root));
                // set fully charged
                serumArray.setItemDamage(0);
                for (IChromosomeType chromosomeType : root.getKaryotype()) {
                    if (chromosomeType != speciesChromosomeType) {
                        IAllele allele = defaultTemplate[chromosomeType.ordinal()];
                        Engineering.addGene(serumArray, new Gene(allele, chromosomeType, root));
                    }
                }
                recipes.add(new InoculatorRecipeWrapper(serumArray, memberStack));
                recipes.add(new SplicerRecipeWrapper(serumArray, memberStack));
            }
        }
    }
    return recipes;
}

Example 18 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class IsolatorRecipeMaker method create.

public static List<IsolatorRecipeWrapper> create() {
    List<IsolatorRecipeWrapper> recipes = new ArrayList<>();
    Collection<ISpeciesRoot> roots = AlleleManager.alleleRegistry.getSpeciesRoot().values();
    for (ISpeciesRoot root : roots) {
        ISpeciesType[] speciesTypes = root.getIconType().getClass().getEnumConstants();
        IChromosomeType speciesChromosomeType = root.getSpeciesChromosomeType();
        IAllele[] defaultTemplate = root.getDefaultTemplate();
        IIndividual individual = root.templateAsIndividual(defaultTemplate);
        for (ISpeciesType speciesType : speciesTypes) {
            ItemStack memberStack = root.getMemberStack(individual, speciesType);
            memberStack.setItemDamage(OreDictionary.WILDCARD_VALUE);
            IAllele species = defaultTemplate[speciesChromosomeType.ordinal()];
            ItemStack filledSequence = ItemSequence.create(new Gene(species, speciesChromosomeType, root), false);
            IsolatorRecipeWrapper recipeWrapper = new IsolatorRecipeWrapper(memberStack, filledSequence);
            recipes.add(recipeWrapper);
        }
    }
    return recipes;
}

Example 19 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class GeneTracker method writeToNBT.

@Override
public NBTTagCompound writeToNBT(NBTTagCompound nbt) {
    for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
        NBTTagCompound nbtRoot = new NBTTagCompound();
        for (IChromosomeType chromo : root.getKaryotype()) {
            NBTTagList nbtChromo = new NBTTagList();
            for (IGene gene : discoveredGenes) {
                if (gene.getSpeciesRoot() == root && gene.getChromosome() == chromo) {
                    nbtChromo.appendTag(new NBTTagString(gene.getAllele().getUID()));
                }
            }
            nbtRoot.setTag(String.valueOf(chromo.ordinal()), nbtChromo);
        }
        nbt.setTag(root.getUID(), nbtRoot);
    }
    return nbt;
}

Example 20 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class GeneTracker method readFromNBT.

@Override
public void readFromNBT(NBTTagCompound nbt) {
    for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
        if (!nbt.hasKey(root.getUID())) {
            continue;
        }
        NBTTagCompound nbtRoot = nbt.getCompoundTag(root.getUID());
        for (IChromosomeType chromo : root.getKaryotype()) {
            if (!nbtRoot.hasKey(String.valueOf(chromo.ordinal()))) {
                continue;
            }
            NBTTagList nbtChromo = nbtRoot.getTagList(String.valueOf(chromo.ordinal()), 8);
            for (int i = 0; i < nbtChromo.tagCount(); ++i) {
                String uid = nbtChromo.getStringTagAt(i);
                IAllele allele = AlleleManager.alleleRegistry.getAllele(uid);
                if (allele == null) {
                    continue;
                }
                Gene gene = new Gene(allele, chromo, root);
                if (!discoveredGenes.contains(gene)) {
                    discoveredGenes.add(gene);
                }
            }
        }
    }
}