Examples with IChromosomeType forestry.api.genetics.IChromosomeType used on opensource projects

Example 6 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class WindowFieldKit method refreshSpecies.

private void refreshSpecies() {
    final ItemStack item = this.getWindowInventory().getStackInSlot(INDIVIDUAL_SLOT);
    if (item.isEmpty() || !AlleleManager.alleleRegistry.isIndividual(item)) {
        return;
    }
    final IIndividual ind = AlleleManager.alleleRegistry.getIndividual(item);
    if (ind == null) {
        return;
    }
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(item);
    if (root == null) {
        return;
    }
    IBreedingSystem system = Binnie.GENETICS.getSystem(root);
    this.chromo.setSystem(system);
    final Random rand = new Random();
    this.info.clear();
    for (final IChromosomeType type : root.getKaryotype()) {
        if (!Binnie.GENETICS.isInvalidChromosome(type)) {
            final IAllele allele = ind.getGenome().getActiveAllele(type);
            final List<String> infos = new ArrayList<>();
            int i = 0;
            for (String pref = root.getUID() + ".fieldkit." + type.getName().toLowerCase() + '.'; I18N.canLocalise(pref + i); ++i) {
                infos.add(I18N.localise(pref + i));
            }
            String text = system.getAlleleName(type, allele);
            if (!infos.isEmpty()) {
                text = infos.get(rand.nextInt(infos.size()));
            }
            this.info.put(type, text);
            this.chromo.setSystem(system);
        }
    }
}

Example 7 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class ManagerGenetics method loadAlleles.

private void loadAlleles() {
    this.invalidChromosomeTypes.clear();
    for (IBreedingSystem system : BREEDING_SYSTEMS.values()) {
        ISpeciesRoot root = system.getSpeciesRoot();
        Map<IChromosomeType, List<IAllele>> chromosomeMap = new LinkedHashMap<>();
        for (IChromosomeType chromosome : root.getKaryotype()) {
            TreeSet<IAllele> alleles = new TreeSet<>(new ComparatorAllele());
            for (IIndividual individual : root.getIndividualTemplates()) {
                IGenome genome = individual.getGenome();
                IAllele activeAllele = genome.getActiveAllele(chromosome);
                IAllele inactiveAllele = genome.getInactiveAllele(chromosome);
                if (chromosome.getAlleleClass().isInstance(activeAllele)) {
                    alleles.add(activeAllele);
                }
                if (!chromosome.getAlleleClass().isInstance(inactiveAllele)) {
                    continue;
                }
                alleles.add(inactiveAllele);
            }
            system.addExtraAlleles(chromosome, alleles);
            if (alleles.size() == 0) {
                this.invalidChromosomeTypes.add(chromosome);
            } else {
                final List<IAllele> alleleList = new ArrayList<>(alleles);
                chromosomeMap.put(chromosome, alleleList);
            }
        }
        this.chromosomeArray.put(root, chromosomeMap);
    }
}

Example 8 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class WindowGeneBank method initialiseClient.

@Override
@SideOnly(Side.CLIENT)
public void initialiseClient() {
    super.initialiseClient();
    this.addEventHandler(EventValueChanged.class, event -> {
        if (event.getValue() instanceof BreedingSystem) {
            WindowGeneBank.this.genes.setValue((IBreedingSystem) event.getValue());
        }
    });
    int x = 16;
    final int y = 32;
    new ControlPlayerInventory(this, x, y);
    x += 124;
    int boxX = x;
    final int geneBoxWidth = 120;
    new Panel(this, boxX + 24, 32, geneBoxWidth, 120, MinecraftGUI.PanelType.BLACK);
    new Panel(this, boxX + 24 + geneBoxWidth, 32, 14, 120, MinecraftGUI.PanelType.GRAY);
    final ControlScrollableContent<ControlGeneScroll> scroll = new ControlScrollableContent<>(this, boxX + 24 + 2, 34, geneBoxWidth + 10, 116, 12);
    final ControlTextEdit edit = new ControlTextEdit(this, boxX + 27 + geneBoxWidth - 70, 18, 80, 12);
    this.addEventHandler(EventTextEdit.class, EventHandlerOrigin.SELF, edit, event -> {
        String value = event.getValue();
        if (value == null) {
            value = "";
        }
        WindowGeneBank.this.genes.setFilter(value);
    });
    this.genes = new ControlGeneScroll(scroll, 1, 1, geneBoxWidth, 116);
    scroll.setScrollableContent(this.genes);
    this.genes.setGenes(Binnie.GENETICS.getFirstActiveSystem());
    final ControlTabBar<IBreedingSystem> tabBar = new GeneBankTabBar(this, boxX);
    tabBar.setValue(Binnie.GENETICS.getFirstActiveSystem());
    boxX -= 8;
    final ControlTabBar<String> infoTabs = new ControlTabBar<>(this, boxX + 8, 160, 16, 50, Alignment.LEFT, Arrays.asList("Info", "Stats", "Ranking"));
    final Panel panelProject = new Panel(this, boxX + 24, 160, geneBoxWidth + 20, 50, MinecraftGUI.PanelType.BLACK);
    int totalGenes = 0;
    int seqGenes = 0;
    for (final IBreedingSystem system : Binnie.GENETICS.getActiveSystems()) {
        final GeneTracker tracker = GeneTracker.getTracker(this.getWorld(), this.getUsername());
        final Map<IChromosomeType, List<IAllele>> genes = Binnie.GENETICS.getChromosomeMap(system.getSpeciesRoot());
        for (final Map.Entry<IChromosomeType, List<IAllele>> entry : genes.entrySet()) {
            totalGenes += entry.getValue().size();
            for (final IAllele allele : entry.getValue()) {
                final Gene gene = new Gene(allele, entry.getKey(), system.getSpeciesRoot());
                if (tracker.isSequenced(gene)) {
                    ++seqGenes;
                }
            }
        }
    }
    new ControlText(panelProject, new Point(4, 4), "§nFull Genome Project");
    new ControlText(panelProject, new Point(4, 18), "§oSequenced §r" + seqGenes + '/' + totalGenes + " §oGenes");
}

Example 9 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class ItemSerum method getSubItems.

@Override
public void getSubItems(CreativeTabs tab, NonNullList<ItemStack> items) {
    if (this.isInCreativeTab(tab)) {
        for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
            Map<IChromosomeType, List<IAllele>> chromosomeMap = Binnie.GENETICS.getChromosomeMap(root);
            if (chromosomeMap != null) {
                for (Map.Entry<IChromosomeType, List<IAllele>> entry : chromosomeMap.entrySet()) {
                    IChromosomeType chromosome = entry.getKey();
                    for (final IAllele allele : entry.getValue()) {
                        Gene gene = Gene.create(allele, chromosome, root);
                        IGeneItem geneItem = new GeneItem(gene);
                        ItemStack stack = new ItemStack(this);
                        geneItem.writeToItem(stack);
                        items.add(stack);
                    }
                }
            }
        }
    }
}

Example 10 with IChromosomeType

use of forestry.api.genetics.IChromosomeType in project Binnie by ForestryMC.

the class ItemSerumArray method getSubItems.

@Override
public void getSubItems(CreativeTabs tab, NonNullList<ItemStack> items) {
    if (this.isInCreativeTab(tab)) {
        for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
            for (IIndividual template : root.getIndividualTemplates()) {
                if (template.getGenome().getPrimary().isSecret()) {
                    continue;
                }
                IGeneItem geneItem = new GeneArrayItem();
                for (IChromosomeType type : root.getKaryotype()) {
                    IChromosome chromosome = template.getGenome().getChromosomes()[type.ordinal()];
                    if (chromosome != null) {
                        IAllele active = chromosome.getActiveAllele();
                        geneItem.addGene(new Gene(active, type, root));
                    }
                }
                ItemStack array = new ItemStack(this);
                geneItem.writeToItem(array);
                items.add(array);
            }
        }
    }
}