Examples with IGenome forestry.api.genetics.IGenome used on opensource projects

Example 11 with IGenome

use of forestry.api.genetics.IGenome in project Binnie by ForestryMC.

the class IsolatorLogic method onFinishTask.

@Override
protected void onFinishTask() {
    super.onFinishTask();
    final Random rand = this.getMachine().getWorld().rand;
    MachineUtil util = this.getUtil();
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(util.getStack(Isolator.SLOT_TARGET));
    if (root == null) {
        return;
    }
    final IIndividual individual = root.getMember(util.getStack(Isolator.SLOT_TARGET));
    if (individual == null) {
        return;
    }
    IChromosomeType[] karyotype = root.getKaryotype();
    IChromosomeType chromosome = karyotype[rand.nextInt(karyotype.length)];
    IGenome genome = individual.getGenome();
    IAllele allele = rand.nextBoolean() ? genome.getActiveAllele(chromosome) : genome.getInactiveAllele(chromosome);
    Gene gene = Gene.create(allele, chromosome, root);
    final ItemStack serum = ItemSequence.create(gene);
    util.setStack(Isolator.SLOT_RESULUT, serum);
    util.decreaseStack(Isolator.SLOT_SEQUENCER_VIAL, 1);
    if (rand.nextFloat() < TARGET_LOSS_CHANCE) {
        util.decreaseStack(Isolator.SLOT_TARGET, 1);
    }
    util.drainTank(Isolator.TANK_ETHANOL, ETHANOL_PER_PROCESS);
}

Example 12 with IGenome

use of forestry.api.genetics.IGenome in project Binnie by ForestryMC.

the class InoculatorLogic method isValidSerum.

@Nullable
public ErrorState isValidSerum() {
    final ItemStack serum = this.getUtil().getStack(Inoculator.SLOT_SERUM_VIAL);
    final ItemStack target = this.getUtil().getStack(Inoculator.SLOT_TARGET);
    final IGene[] genes = Engineering.getGenes(serum);
    if (genes.length == 0) {
        return new ErrorState(GeneticsErrorCode.INVALID_SERUM_NO);
    }
    if (!genes[0].getSpeciesRoot().isMember(target)) {
        return new ErrorState(GeneticsErrorCode.INVALID_SERUM_MISMATCH);
    }
    final IIndividual individual = genes[0].getSpeciesRoot().getMember(target);
    if (individual != null) {
        final IGenome genome = individual.getGenome();
        for (final IGene gene : genes) {
            final IAllele a = genome.getActiveAllele(gene.getChromosome());
            final IAllele b = genome.getInactiveAllele(gene.getChromosome());
            if (!a.getUID().equals(gene.getAllele().getUID()) || !b.getUID().equals(gene.getAllele().getUID())) {
                return null;
            }
        }
    }
    return new ErrorState(GeneticsErrorCode.DEFUNCT_SERUM);
}

Example 13 with IGenome

use of forestry.api.genetics.IGenome in project Binnie by ForestryMC.

the class ToleranceSystem method alter.

public ItemStack alter(final ItemStack stack, final ItemStack acc) {
    final Random rand = new Random();
    final float effect = this.type.getEffect(acc);
    if (rand.nextFloat() > Math.abs(effect)) {
        return stack;
    }
    final IIndividual member = AlleleManager.alleleRegistry.getIndividual(stack);
    final IGenome genome = member.getGenome();
    final IAlleleTolerance tolAllele = (IAlleleTolerance) genome.getActiveAllele(this.chromosomeType);
    final Tolerance tol = Tolerance.get(tolAllele.getValue());
    final Tolerance newTol = Acclimatiser.alterTolerance(tol, effect);
    if (rand.nextFloat() > 1.0f / (-newTol.getBounds()[0] + newTol.getBounds()[1])) {
        return stack;
    }
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(stack);
    boolean setPrimary = rand.nextBoolean();
    boolean setSecondary = !setPrimary;
    Gene gene = new Gene(newTol.getAllele(), this.chromosomeType, root);
    Splicer.setGene(gene, stack, setPrimary, setSecondary);
    return stack;
}