Examples with ResourceInstantiationException gate.creole.ResourceInstantiationException used on opensource projects

Example 1 with ResourceInstantiationException

use of gate.creole.ResourceInstantiationException in project gate-core by GateNLP.

the class OntologyUtilities method getOntology.

/**
 * Checks the availability of an existing instance of the Ontology
 * with the given URL in the GATE's CreoleRegister. If found, returns
 * the first available one (doesn't guranttee in which order). If not
 * found, attempts to create one using OWLIM implementation with
 * RDF/XML as ontology type and if successful returns the newly
 * created instance of the ontology.
 * @throws ResourceInstantiationException
 * @deprecated - this method should be avoided
 */
@Deprecated
public static Ontology getOntology(URL url) throws ResourceInstantiationException {
    java.util.List<Resource> loadedOntologies = null;
    Ontology ontology = null;
    try {
        loadedOntologies = Gate.getCreoleRegister().getAllInstances(Ontology.class.getName());
    } catch (GateException ge) {
        throw new ResourceInstantiationException("Cannot list loaded ontologies", ge);
    }
    Iterator<Resource> ontIter = loadedOntologies.iterator();
    while (ontology == null && ontIter.hasNext()) {
        Ontology anOntology = (Ontology) ontIter.next();
        if (anOntology.getURL().equals(url)) {
            ontology = anOntology;
            break;
        }
    }
    try {
        // if not found, load it
        if (ontology == null) {
            // hardcoded to use OWL as the ontology type
            FeatureMap params = Factory.newFeatureMap();
            params.put("persistLocation", File.createTempFile("abc", "abc").getParentFile().toURI().toURL());
            params.put("rdfXmlURL", url);
            ontology = (Ontology) Factory.createResource("gate.creole.ontology.owlim.OWLIMOntologyLR", params);
        }
    } catch (Exception e) {
        throw new ResourceInstantiationException("Cannot create a new instance of ontology", e);
    }
    return ontology;
}

Example 2 with ResourceInstantiationException

use of gate.creole.ResourceInstantiationException in project gate-core by GateNLP.

the class FeatureMapEditorDialog method initGuiComponents.

protected void initGuiComponents() {
    this.setMinimumSize(new Dimension(150, 300));
    getContentPane().setLayout(new BorderLayout());
    // create the FeaturesSchemaEditor for the main body of the dialog
    fmView = new FeaturesSchemaEditor();
    try {
        fmView.init();
    } catch (ResourceInstantiationException rie) {
        // can't happen, but needs to be caught to satisfy the compiler
        throw new GateRuntimeException("FeaturesSchemaEditor.init() threw " + "ResourceInstantiationException!", rie);
    }
    fmView.setTarget(tempFMHolder);
    // make sure the window is a sensible size
    Dimension preferredSize = fmView.getPreferredSize();
    if (preferredSize.height < 150) {
        preferredSize.height = 150;
    } else if (preferredSize.height > 300) {
        preferredSize.height = 300;
    }
    fmView.setPreferredSize(preferredSize);
    JPanel fmViewPanel = new JPanel(new BorderLayout());
    fmViewPanel.add(fmView, BorderLayout.CENTER);
    fmViewPanel.setBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5));
    getContentPane().add(fmViewPanel, BorderLayout.CENTER);
    // the bottom buttons
    Box buttonsBox = Box.createHorizontalBox();
    buttonsBox.add(Box.createHorizontalGlue());
    okButton = new JButton("OK");
    buttonsBox.add(okButton);
    buttonsBox.add(Box.createHorizontalStrut(5));
    cancelButton = new JButton("Cancel");
    buttonsBox.add(cancelButton);
    buttonsBox.add(Box.createHorizontalGlue());
    getContentPane().add(buttonsBox, BorderLayout.SOUTH);
}

Example 3 with ResourceInstantiationException

use of gate.creole.ResourceInstantiationException in project gate-core by GateNLP.

the class AnnotationSetsView method initGUI.

@Override
protected void initGUI() {
    // get a pointer to the textual view used for highlights
    Iterator<DocumentView> centralViewsIter = owner.getCentralViews().iterator();
    while (textView == null && centralViewsIter.hasNext()) {
        DocumentView aView = centralViewsIter.next();
        if (aView instanceof TextualDocumentView)
            textView = (TextualDocumentView) aView;
    }
    textPane = (JTextArea) ((JScrollPane) textView.getGUI()).getViewport().getView();
    // get a pointer to the list view
    Iterator<DocumentView> horizontalViewsIter = owner.getHorizontalViews().iterator();
    while (listView == null && horizontalViewsIter.hasNext()) {
        DocumentView aView = horizontalViewsIter.next();
        if (aView instanceof AnnotationListView)
            listView = (AnnotationListView) aView;
    }
    // get a pointer to the stack view
    horizontalViewsIter = owner.getHorizontalViews().iterator();
    while (stackView == null && horizontalViewsIter.hasNext()) {
        DocumentView aView = horizontalViewsIter.next();
        if (aView instanceof AnnotationStackView)
            stackView = (AnnotationStackView) aView;
    }
    mainTable = new XJTable();
    tableModel = new SetsTableModel();
    mainTable.setSortable(false);
    mainTable.setModel(tableModel);
    mainTable.setRowMargin(0);
    mainTable.getColumnModel().setColumnMargin(0);
    SetsTableCellRenderer cellRenderer = new SetsTableCellRenderer();
    mainTable.getColumnModel().getColumn(NAME_COL).setCellRenderer(cellRenderer);
    mainTable.getColumnModel().getColumn(SELECTED_COL).setCellRenderer(cellRenderer);
    SetsTableCellEditor cellEditor = new SetsTableCellEditor();
    mainTable.getColumnModel().getColumn(SELECTED_COL).setCellEditor(cellEditor);
    mainTable.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    mainTable.setColumnSelectionAllowed(false);
    mainTable.setRowSelectionAllowed(true);
    mainTable.setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
    // block autocreation of new columns from now on
    mainTable.setAutoCreateColumnsFromModel(false);
    mainTable.setTableHeader(null);
    mainTable.setShowGrid(false);
    mainTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
    // the background colour seems to change somewhere when using the GTK+
    // look and feel on Linux, so we copy the value now and set it
    Color tableBG = mainTable.getBackground();
    // make a copy of the value (as the reference gets changed somewhere)
    tableBG = new Color(tableBG.getRGB());
    mainTable.setBackground(tableBG);
    scroller = new JScrollPane(mainTable);
    scroller.getViewport().setOpaque(true);
    scroller.getViewport().setBackground(tableBG);
    try {
        annotationEditor = createAnnotationEditor(textView, this);
    } catch (ResourceInstantiationException e) {
        // this should not really happen
        throw new GateRuntimeException("Could not initialise the annotation editor!", e);
    }
    mainPanel = new JPanel();
    mainPanel.setLayout(new GridBagLayout());
    GridBagConstraints constraints = new GridBagConstraints();
    constraints.gridy = 0;
    constraints.gridx = GridBagConstraints.RELATIVE;
    constraints.gridwidth = 2;
    constraints.weighty = 1;
    constraints.weightx = 1;
    constraints.fill = GridBagConstraints.BOTH;
    mainPanel.add(scroller, constraints);
    constraints.gridy = 1;
    constraints.gridwidth = 1;
    constraints.weighty = 0;
    newSetNameTextField = new JTextField();
    mainPanel.add(newSetNameTextField, constraints);
    constraints.weightx = 0;
    newSetAction = new NewAnnotationSetAction();
    mainPanel.add(new JButton(newSetAction), constraints);
    populateUI();
    tableModel.fireTableDataChanged();
    eventMinder.start();
    initListeners();
}

Example 4 with ResourceInstantiationException

use of gate.creole.ResourceInstantiationException in project gate-core by GateNLP.

the class ControllerMetadataViewer method init.

@SuppressWarnings("rawtypes")
@Override
public Resource init() throws ResourceInstantiationException {
    setLayout(new BorderLayout());
    add(new JScrollPane(display), BorderLayout.CENTER);
    try {
        builder = builderFactory.newDocumentBuilder();
    } catch (ParserConfigurationException e) {
        throw new ResourceInstantiationException("Unable to construct an XML parser", e);
    }
    if (Configuration.isTrue("xr.use.listeners", true)) {
        List l = display.getMouseTrackingListeners();
        for (Iterator i = l.iterator(); i.hasNext(); ) {
            FSMouseListener listener = (FSMouseListener) i.next();
            if (listener instanceof LinkListener) {
                display.removeMouseTrackingListener(listener);
            }
        }
        display.addMouseTrackingListener(new LinkListener() {

            @Override
            public void linkClicked(BasicPanel panel, String uri) {
                // open any links in an actual web browser
                MainFrame.getInstance().showHelpFrame(uri, null);
            }
        });
    }
    return this;
}

Example 5 with ResourceInstantiationException

use of gate.creole.ResourceInstantiationException in project gate-core by GateNLP.

the class CorpusBenchmarkTool method evaluateCorpus.

// generateCorpus
protected void evaluateCorpus(File fileDir, File processedDir, File markedDir, File errorDir) {
    // 1. check if we have input files and the processed Dir
    if (fileDir == null || !fileDir.exists())
        return;
    if (processedDir == null || !processedDir.exists())
        // if the user wants evaluation of marked and stored that's not possible
        if (isMarkedStored) {
            Out.prln("Cannot evaluate because no processed documents exist.");
            return;
        } else
            isMarkedClean = true;
    // create the error directory or clean it up if needed
    File errDir = null;
    if (isMoreInfoMode) {
        errDir = errorDir;
        if (errDir == null) {
            errDir = new File(currDir, ERROR_DIR_NAME);
        } else {
            // get rid of the directory, coz we wants it clean
            if (!Files.rmdir(errDir))
                Out.prln("cannot delete old error directory: " + errDir);
        }
        Out.prln("Create error directory: " + errDir + "<BR><BR>");
        errDir.mkdir();
    }
    // looked for marked texts only if the directory exists
    boolean processMarked = markedDir != null && markedDir.exists();
    if (!processMarked && (isMarkedStored || isMarkedClean)) {
        Out.prln("Cannot evaluate because no human-annotated documents exist.");
        return;
    }
    if (isMarkedStored) {
        evaluateMarkedStored(markedDir, processedDir, errDir);
        return;
    } else if (isMarkedClean) {
        evaluateMarkedClean(markedDir, fileDir, errDir);
        return;
    }
    Document persDoc = null;
    Document cleanDoc = null;
    Document markedDoc = null;
    // open the datastore and process each document
    try {
        // open the data store
        DataStore sds = Factory.openDataStore("gate.persist.SerialDataStore", processedDir.toURI().toURL().toExternalForm());
        List<String> lrIDs = sds.getLrIds("gate.corpora.DocumentImpl");
        for (int i = 0; i < lrIDs.size(); i++) {
            String docID = lrIDs.get(i);
            // read the stored document
            FeatureMap features = Factory.newFeatureMap();
            features.put(DataStore.DATASTORE_FEATURE_NAME, sds);
            features.put(DataStore.LR_ID_FEATURE_NAME, docID);
            FeatureMap hparams = Factory.newFeatureMap();
            // Gate.setHiddenAttribute(hparams, true);
            persDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", features, hparams);
            if (isMoreInfoMode) {
                StringBuffer errName = new StringBuffer(persDoc.getName());
                errName.replace(persDoc.getName().lastIndexOf("."), persDoc.getName().length(), ".err");
                Out.prln("<H2>" + "<a href=\"err/" + errName.toString() + "\">" + persDoc.getName() + "</a>" + "</H2>");
            } else
                Out.prln("<H2>" + persDoc.getName() + "</H2>");
            File cleanDocFile = new File(fileDir, persDoc.getName());
            // try reading the original document from clean
            if (!cleanDocFile.exists()) {
                Out.prln("Warning: Cannot find original document " + persDoc.getName() + " in " + fileDir);
            } else {
                FeatureMap params = Factory.newFeatureMap();
                params.put(Document.DOCUMENT_URL_PARAMETER_NAME, cleanDocFile.toURI().toURL());
                params.put(Document.DOCUMENT_ENCODING_PARAMETER_NAME, documentEncoding);
                // create the document
                cleanDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", params, hparams);
                cleanDoc.setName(persDoc.getName());
            }
            // try finding the marked document
            StringBuffer docName = new StringBuffer(persDoc.getName());
            if (!isMarkedDS) {
                docName.replace(persDoc.getName().lastIndexOf("."), docName.length(), ".xml");
                File markedDocFile = new File(markedDir, docName.toString());
                if (!processMarked || !markedDocFile.exists()) {
                    Out.prln("Warning: Cannot find human-annotated document " + markedDocFile + " in " + markedDir);
                } else {
                    FeatureMap params = Factory.newFeatureMap();
                    params.put(Document.DOCUMENT_URL_PARAMETER_NAME, markedDocFile.toURI().toURL());
                    params.put(Document.DOCUMENT_ENCODING_PARAMETER_NAME, documentEncoding);
                    // create the document
                    markedDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", params, hparams);
                    markedDoc.setName(persDoc.getName());
                }
            } else {
                // open marked from a DS
                // open the data store
                DataStore sds1 = Factory.openDataStore("gate.persist.SerialDataStore", markedDir.toURI().toURL().toExternalForm());
                List<String> lrIDs1 = sds1.getLrIds("gate.corpora.DocumentImpl");
                boolean found = false;
                int k = 0;
                // search for the marked doc with the same name
                while (k < lrIDs1.size() && !found) {
                    String docID1 = lrIDs1.get(k);
                    // read the stored document
                    FeatureMap features1 = Factory.newFeatureMap();
                    features1.put(DataStore.DATASTORE_FEATURE_NAME, sds1);
                    features1.put(DataStore.LR_ID_FEATURE_NAME, docID1);
                    Document tempDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", features1, hparams);
                    // check whether this is our doc
                    if (((String) tempDoc.getFeatures().get("gate.SourceURL")).endsWith(persDoc.getName())) {
                        found = true;
                        markedDoc = tempDoc;
                    } else
                        k++;
                }
            }
            evaluateDocuments(persDoc, cleanDoc, markedDoc, errDir);
            if (persDoc != null) {
                final gate.Document pd = persDoc;
                javax.swing.SwingUtilities.invokeLater(new Runnable() {

                    @Override
                    public void run() {
                        Factory.deleteResource(pd);
                    }
                });
            }
            if (cleanDoc != null) {
                final gate.Document cd = cleanDoc;
                javax.swing.SwingUtilities.invokeLater(new Runnable() {

                    @Override
                    public void run() {
                        Factory.deleteResource(cd);
                    }
                });
            }
            if (markedDoc != null) {
                final gate.Document md = markedDoc;
                javax.swing.SwingUtilities.invokeLater(new Runnable() {

                    @Override
                    public void run() {
                        Factory.deleteResource(md);
                    }
                });
            }
        }
        // for loop through saved docs
        sds.close();
    } catch (java.net.MalformedURLException ex) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex.getMessage()).initCause(ex);
    } catch (PersistenceException ex1) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex1.getMessage()).initCause(ex1);
    } catch (ResourceInstantiationException ex2) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex2.getMessage()).initCause(ex2);
    }
}