Examples with PersistenceException gate.persist.PersistenceException used on opensource projects

Example 16 with PersistenceException

use of gate.persist.PersistenceException in project gate-core by GateNLP.

the class CorpusBenchmarkTool method evaluateMarkedStored.

// evaluateCorpus
protected void evaluateMarkedStored(File markedDir, File storedDir, File errDir) {
    Document persDoc = null;
    Document cleanDoc = null;
    Document markedDoc = null;
    // open the datastore and process each document
    try {
        // open the data store
        DataStore sds = Factory.openDataStore("gate.persist.SerialDataStore", storedDir.toURI().toURL().toExternalForm());
        List<String> lrIDs = sds.getLrIds("gate.corpora.DocumentImpl");
        for (int i = 0; i < lrIDs.size(); i++) {
            String docID = lrIDs.get(i);
            // read the stored document
            FeatureMap features = Factory.newFeatureMap();
            features.put(DataStore.DATASTORE_FEATURE_NAME, sds);
            features.put(DataStore.LR_ID_FEATURE_NAME, docID);
            FeatureMap hparams = Factory.newFeatureMap();
            // Gate.setHiddenAttribute(hparams, true);
            persDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", features, hparams);
            if (isMoreInfoMode) {
                StringBuffer errName = new StringBuffer(persDoc.getName());
                errName.replace(persDoc.getName().lastIndexOf("."), persDoc.getName().length(), ".err");
                Out.prln("<H2>" + "<a href=\"err/" + errName.toString() + "\">" + persDoc.getName() + "</a>" + "</H2>");
            } else
                Out.prln("<H2>" + persDoc.getName() + "</H2>");
            if (!this.isMarkedDS) {
                // try finding the marked document as file
                StringBuffer docName = new StringBuffer(persDoc.getName());
                docName.replace(persDoc.getName().lastIndexOf("."), docName.length(), ".xml");
                File markedDocFile = new File(markedDir, docName.toString());
                if (!markedDocFile.exists()) {
                    Out.prln("Warning: Cannot find human-annotated document " + markedDocFile + " in " + markedDir);
                } else {
                    FeatureMap params = Factory.newFeatureMap();
                    params.put(Document.DOCUMENT_URL_PARAMETER_NAME, markedDocFile.toURI().toURL());
                    params.put(Document.DOCUMENT_ENCODING_PARAMETER_NAME, documentEncoding);
                    // create the document
                    markedDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", params, hparams);
                    markedDoc.setName(persDoc.getName());
                }
            // find marked as file
            } else {
                try {
                    // open marked from a DS
                    // open the data store
                    DataStore sds1 = Factory.openDataStore("gate.persist.SerialDataStore", markedDir.toURI().toURL().toExternalForm());
                    List<String> lrIDs1 = sds1.getLrIds("gate.corpora.DocumentImpl");
                    boolean found = false;
                    int k = 0;
                    // search for the marked doc with the same name
                    while (k < lrIDs1.size() && !found) {
                        String docID1 = lrIDs1.get(k);
                        // read the stored document
                        FeatureMap features1 = Factory.newFeatureMap();
                        features1.put(DataStore.DATASTORE_FEATURE_NAME, sds1);
                        features1.put(DataStore.LR_ID_FEATURE_NAME, docID1);
                        Document tempDoc = (Document) Factory.createResource("gate.corpora.DocumentImpl", features1, hparams);
                        // check whether this is our doc
                        if (((String) tempDoc.getFeatures().get("gate.SourceURL")).endsWith(persDoc.getName())) {
                            found = true;
                            markedDoc = tempDoc;
                        } else
                            k++;
                    }
                } catch (java.net.MalformedURLException ex) {
                    Out.prln("Error finding marked directory " + markedDir.getAbsolutePath());
                } catch (gate.persist.PersistenceException ex1) {
                    Out.prln("Error opening marked as a datastore (-marked_ds specified)");
                } catch (gate.creole.ResourceInstantiationException ex2) {
                    Out.prln("Error opening marked as a datastore (-marked_ds specified)");
                }
            }
            evaluateDocuments(persDoc, cleanDoc, markedDoc, errDir);
            if (persDoc != null) {
                final gate.Document pd = persDoc;
                javax.swing.SwingUtilities.invokeLater(new Runnable() {

                    @Override
                    public void run() {
                        Factory.deleteResource(pd);
                    }
                });
            }
            if (markedDoc != null) {
                final gate.Document md = markedDoc;
                javax.swing.SwingUtilities.invokeLater(new Runnable() {

                    @Override
                    public void run() {
                        Factory.deleteResource(md);
                    }
                });
            }
        }
        // for loop through saved docs
        sds.close();
    } catch (java.net.MalformedURLException ex) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex.getMessage()).initCause(ex);
    } catch (PersistenceException ex1) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex1.getMessage()).initCause(ex1);
    } catch (ResourceInstantiationException ex2) {
        throw (GateRuntimeException) new GateRuntimeException("CorpusBenchmark: " + ex2.getMessage()).initCause(ex2);
    }
}

Example 17 with PersistenceException

use of gate.persist.PersistenceException in project gate-core by GateNLP.

the class SerialCorpusImpl method resourceDeleted.

/**
 * Called by a datastore when a resource has been deleted
 */
@Override
public void resourceDeleted(DatastoreEvent evt) {
    DataStore ds = (DataStore) evt.getSource();
    // 1. check whether this datastore fired the event. If not, return.
    if (!ds.equals(this.dataStore))
        return;
    Object docID = evt.getResourceID();
    if (docID == null)
        return;
    if (DEBUG)
        Out.prln("Resource deleted called for: " + docID);
    // unloaded immediately
    if (docID.equals(this.getLRPersistenceId())) {
        Factory.deleteResource(this);
        return;
    }
    // if
    boolean isDirty = false;
    // first
    for (int i = 0; i < docDataList.size(); i++) {
        DocumentData docData = docDataList.get(i);
        // don't break the loop, because it might appear more than once
        if (docID.equals(docData.getPersistentID())) {
            if (evt.getResource() == null) {
                // instead of calling remove() which tries to load the
                // document
                // remove it from the documents and docDataList
                documentRemoved(docDataList.get(i).persistentID.toString());
                docDataList.remove(i);
                documents.remove(i);
                isDirty = true;
                i--;
                continue;
            }
            remove(i);
            isDirty = true;
        }
    // if
    }
    if (isDirty)
        try {
            this.dataStore.sync(this);
        } catch (PersistenceException ex) {
            throw new GateRuntimeException("SerialCorpusImpl: " + ex.getMessage());
        } catch (SecurityException sex) {
            throw new GateRuntimeException("SerialCorpusImpl: " + sex.getMessage());
        }
}