Examples with IJImageSource gdsc.smlm.ij.IJImageSource used on opensource projects

Example 11 with IJImageSource

use of gdsc.smlm.ij.IJImageSource in project GDSC-SMLM by aherbert.

the class OverlayResults method run.

/*
	 * (non-Javadoc)
	 * 
	 * @see ij.plugin.PlugIn#run(java.lang.String)
	 */
public void run(String arg) {
    SMLMUsageTracker.recordPlugin(this.getClass(), arg);
    if (MemoryPeakResults.isMemoryEmpty()) {
        IJ.error(TITLE, "There are no fitting results in memory");
        return;
    }
    names = new String[MemoryPeakResults.getResultNames().size() + 1];
    ids = new int[names.length];
    int c = 0;
    names[c++] = "(None)";
    for (MemoryPeakResults results : MemoryPeakResults.getAllResults()) {
        if (results.getSource().getOriginal() instanceof IJImageSource) {
            IJImageSource source = (IJImageSource) (results.getSource().getOriginal());
            ImagePlus imp = WindowManager.getImage(source.getName());
            if (imp != null) {
                ids[c] = imp.getID();
                names[c++] = results.getName();
            }
        }
    }
    if (c == 1) {
        IJ.error(TITLE, "There are no result images available");
        return;
    }
    names = Arrays.copyOf(names, c);
    Thread t = null;
    Worker w = null;
    NonBlockingGenericDialog gd = new NonBlockingGenericDialog(TITLE);
    gd.addMessage("Overlay results on current image frame");
    gd.addChoice("Results", names, (name == null) ? "" : name);
    gd.addCheckbox("Show_table", showTable);
    gd.addMessage("");
    gd.addHelp(About.HELP_URL);
    gd.hideCancelButton();
    gd.setOKLabel("Close");
    if (!(IJ.isMacro() || java.awt.GraphicsEnvironment.isHeadless())) {
        choice = (Choice) gd.getChoices().get(0);
        choice.addItemListener(this);
        checkbox = (Checkbox) gd.getCheckboxes().get(0);
        checkbox.addItemListener(this);
        label = (Label) gd.getMessage();
        // Listen for changes to an image
        ImagePlus.addImageListener(this);
        show();
        t = new Thread(w = new Worker());
        t.setDaemon(true);
        t.start();
    }
    gd.showDialog();
    if (!(IJ.isMacro() || java.awt.GraphicsEnvironment.isHeadless()))
        ImagePlus.removeImageListener(this);
    if (!gd.wasCanceled()) {
        name = gd.getNextChoice();
        showTable = gd.getNextBoolean();
    }
    if (t != null) {
        w.running = false;
        inbox.close();
        try {
            t.join(0);
        } catch (InterruptedException e) {
        }
        t = null;
    }
}