Examples with CreateDataSettings gdsc.smlm.ij.settings.CreateDataSettings used on opensource projects

Example 1 with CreateDataSettings

use of gdsc.smlm.ij.settings.CreateDataSettings in project GDSC-SMLM by aherbert.

the class LoadLocalisations method run.

/*
	 * (non-Javadoc)
	 * 
	 * @see ij.plugin.PlugIn#run(java.lang.String)
	 */
public void run(String arg) {
    SMLMUsageTracker.recordPlugin(this.getClass(), arg);
    GlobalSettings globalSettings = SettingsManager.loadSettings();
    CreateDataSettings settings = globalSettings.getCreateDataSettings();
    String[] path = Utils.decodePath(settings.localisationsFilename);
    OpenDialog chooser = new OpenDialog("Localisations_File", path[0], path[1]);
    if (chooser.getFileName() == null)
        return;
    settings.localisationsFilename = chooser.getDirectory() + chooser.getFileName();
    SettingsManager.saveSettings(globalSettings);
    LocalisationList localisations = loadLocalisations(settings.localisationsFilename);
    if (localisations == null)
        // Cancelled
        return;
    if (localisations.isEmpty()) {
        IJ.error(TITLE, "No localisations could be loaded");
        return;
    }
    MemoryPeakResults results = localisations.toPeakResults();
    // Ask the user what depth to use to create the in-memory results
    if (!getZDepth(results))
        return;
    if (myLimitZ) {
        MemoryPeakResults results2 = new MemoryPeakResults(results.size());
        results.setName(name);
        results.copySettings(results);
        for (PeakResult peak : results.getResults()) {
            if (peak.error < minz || peak.error > maxz)
                continue;
            results2.add(peak);
        }
        results = results2;
    }
    // Create the in-memory results
    if (results.size() > 0) {
        MemoryPeakResults.addResults(results);
    }
    IJ.showStatus(String.format("Loaded %d localisations", results.size()));
    if (myLimitZ)
        Utils.log("Loaded %d localisations, z between %.2f - %.2f", results.size(), minz, maxz);
    else
        Utils.log("Loaded %d localisations", results.size());
}