use of geometry.MyPoint3D in project facetmodeller by pglelievre.
the class SessionLoader method loadSessionAscii2.
private static boolean loadSessionAscii2(FacetModeller controller, File file, boolean merge) {
int loadVersion = 2;
// We will be constructing some new objects as we read the file:
PLC plc = new PLC();
SectionVector sections = new SectionVector();
GroupVector groups = new GroupVector();
// We will be saving some information to set later:
int ndim;
// these colours will be overwritten
Color calibrationColor = Color.CYAN;
Color edgeColor = Color.BLACK;
Color defineFacetEdgeColor = Color.WHITE;
int pointWidth = 5;
int lineWidth = 1;
// Open the file for reading:
BufferedReader reader = FileUtils.openForReading(file);
if (reader == null) {
return false;
}
// Put everything below in an infinite loop that we can break out of when something goes wrong:
boolean ok = true;
while (true) {
// Read the floored version number:
String textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
String[] ss = textLine.split("[ ]+", 2);
int version;
try {
// converts to integer
version = Integer.parseInt(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
if (!ok) {
break;
}
// Check the version number:
if (version != loadVersion) {
// Close the file:
FileUtils.close(reader);
// Return unsuccessfully:
return false;
}
// Read the number of dimensions, nodes, facets, regions, samples and groups:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
int nnodes, nregions, nfacets, nsections, ngroups;
textLine = textLine.trim();
ss = textLine.split("[ ]+", 7);
try {
// converts to integer
ndim = Integer.parseInt(ss[0].trim());
// converts to integer
nnodes = Integer.parseInt(ss[1].trim());
// converts to integer
nfacets = Integer.parseInt(ss[2].trim());
// converts to integer
nregions = Integer.parseInt(ss[3].trim());
// converts to integer
nsections = Integer.parseInt(ss[4].trim());
// converts to integer
ngroups = Integer.parseInt(ss[5].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
// Check ndim:
if (ndim != controller.numberOfDimensions()) {
ok = false;
break;
}
// Loop over each node:
for (int i = 0; i < nnodes; i++) {
// Read the coordinates of the ith node:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
boolean isTopo;
// initialization of z is needed to avoid compiler warning
double x, y, z = 0.0;
textLine = textLine.trim();
ss = textLine.split("[ ]+", 4);
try {
isTopo = Boolean.parseBoolean(ss[0].trim());
// converts to Double
x = Double.parseDouble(ss[1].trim());
// converts to Double
y = Double.parseDouble(ss[2].trim());
if (isTopo) {
z = Double.parseDouble(ss[3].trim());
}
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
// Add a new node to the plc:
if (isTopo) {
plc.addNode(new NodeOffSection(x, y, z));
} else {
plc.addNode(new NodeOnSection(x, y));
}
// section and group membership will be added later
}
if (!ok) {
break;
}
// Loop over each facet:
for (int i = 0; i < nfacets; i++) {
// Add a new empty facet to the plc (these facets are filled later):
plc.addFacet(new Facet());
}
// Loop over each region:
for (int i = 0; i < nregions; i++) {
// Read the coordinates of the ith region and the isControl information:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
double x, y;
boolean isCon;
textLine = textLine.trim();
ss = textLine.split("[ ]+", 4);
// Try parsing coordinates (must be able to do this):
try {
// converts to Double
x = Double.parseDouble(ss[0].trim());
// converts to Double
y = Double.parseDouble(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
// Check for iscontrol information:
if (ss.length < 3) {
isCon = false;
} else {
if (ss[2].trim().isEmpty()) {
// missing from file (old version of session saver was used)
isCon = false;
} else {
// converts to Boolean
isCon = Boolean.parseBoolean(ss[2].trim());
}
}
// Add a new region to the plc:
// section and group membership will be added later
plc.addRegion(new Region(isCon, x, y));
}
if (!ok) {
break;
}
for (int i = 0; i < nsections; i++) {
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
int sectionType;
try {
sectionType = Integer.parseInt(textLine);
} catch (NumberFormatException e) {
ok = false;
break;
}
if (!ok) {
break;
}
Section section = null;
switch(sectionType) {
case 1:
// Read the file name:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
File imageFile;
if (textLine.startsWith("null")) {
imageFile = null;
} else {
try {
URI uri = new URI(textLine);
// image file or .node file
imageFile = new File(uri);
} catch (URISyntaxException e) {
ok = false;
break;
}
}
// Make a new HasImage object associated with the file:
section = new ImageCrossSection(imageFile);
break;
case 3:
// Read the section name:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
String name = textLine.trim();
// Read the image height:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
int height;
try {
height = Integer.parseInt(textLine);
} catch (NumberFormatException e) {
ok = false;
break;
}
// Read the image color:
Color color;
try {
// parse from RGB string
color = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
section = new NoImageCrossSection(name, color);
break;
case 2:
File nodeFile = null;
File eleFile = null;
// Read the node file name:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (textLine.startsWith("null")) {
nodeFile = null;
} else {
URI uri = null;
try {
uri = new URI(textLine);
} catch (URISyntaxException e) {
ok = false;
}
if (!ok) {
break;
}
try {
// image file or .node file
nodeFile = new File(uri);
} catch (IllegalArgumentException e) {
ok = false;
}
}
if (!ok) {
break;
}
// Read the ele file name:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (textLine.startsWith("null")) {
eleFile = null;
} else {
try {
URI uri = new URI(textLine);
// image file or .node file
eleFile = new File(uri);
} catch (URISyntaxException e) {
ok = false;
}
}
if (!ok) {
break;
}
// formerly a TopoSection
section = new NoImageDepthSection(nodeFile, eleFile);
break;
default:
ok = false;
break;
}
if (!ok) {
break;
}
if (section == null) {
ok = false;
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 2);
Dir3D sliceDirection;
try {
// converts to integer
int idir = Integer.parseInt(ss[0].trim());
sliceDirection = Dir3D.fromInt(idir);
} catch (NumberFormatException e) {
ok = false;
break;
}
if (!ok) {
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 2);
double loc;
try {
// converts to Double
loc = Double.parseDouble(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
if (!ok) {
break;
}
double x, y;
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (!textLine.startsWith("null")) {
ss = textLine.split("[ ]+", 3);
try {
// converts to Double
x = Double.parseDouble(ss[0].trim());
// converts to Double
y = Double.parseDouble(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
section.setTyped1(new MyPoint3D(x, y, sliceDirection, loc));
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (!textLine.startsWith("null")) {
ss = textLine.split("[ ]+", 3);
try {
// converts to Double
x = Double.parseDouble(ss[0].trim());
// converts to Double
y = Double.parseDouble(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
section.setTyped2(new MyPoint3D(x, y, sliceDirection, loc));
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (!textLine.startsWith("null")) {
ss = textLine.split("[ ]+", 3);
try {
// converts to Double
x = Double.parseDouble(ss[0].trim());
// converts to Double
y = Double.parseDouble(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
section.setClicked1(new MyPoint2D(x, y));
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
if (!textLine.startsWith("null")) {
ss = textLine.split("[ ]+", 3);
try {
// converts to Double
x = Double.parseDouble(ss[0].trim());
// converts to Double
y = Double.parseDouble(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
if (!ok) {
break;
}
section.setClicked2(new MyPoint2D(x, y));
}
sections.add(section);
}
if (!ok) {
break;
}
// Loop over each group:
for (int i = 0; i < ngroups; i++) {
// Create the group object:
Group group = new Group();
// Read the group name:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
group.setName(textLine.trim());
// Read the group colours:
Color col;
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
col = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
group.setNodeColor(col);
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
col = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
group.setFacetColor(col);
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
col = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
group.setRegionColor(col);
// Add the group to the list of groups:
groups.add(group);
}
if (!ok) {
break;
}
// Loop over each node:
for (int i = 0; i < nnodes; i++) {
Node node = plc.getNode(i);
// The node gets linked to the facets in the loop over each facet below.
// Read the section id and group id:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 3);
// section and group id
int sid, gid;
try {
// converts to integer
sid = Integer.parseInt(ss[0].trim());
// converts to integer
gid = Integer.parseInt(ss[1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
// Cross-link the node and section:
node.setSection(sections.get(sid));
sections.get(sid).addNode(node);
// Cross-link the node and group:
node.setGroup(groups.get(gid));
groups.get(gid).addNode(node);
}
if (!ok) {
break;
}
// Loop over each facet:
for (int i = 0; i < nfacets; i++) {
Facet facet = plc.getFacet(i);
// Read the node id's and link those nodes to the facet:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+");
// number of nodes
int n;
try {
// converts to integer
n = Integer.parseInt(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
if (!ok) {
break;
}
for (int j = 0; j < n; j++) {
// node id
int id;
try {
// converts to integer
id = Integer.parseInt(ss[j + 1].trim());
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) {
ok = false;
break;
}
// Cross-link the facet and node:
facet.addNode(plc.getNode(id));
plc.getNode(id).addFacet(facet);
}
// Read the section id's:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
/*
textLine = textLine.trim();
ss = textLine.split("[ ]+");
try {
n = Integer.parseInt(ss[0].trim()); // converts to integer
} catch (NumberFormatException e) { ok=false; break; }
if (!ok) { break; }
for (int j=0 ; j<n ; j++ ) {
int id;
try {
id = Integer.parseInt(ss[j+1].trim()); // converts to integer
} catch (NumberFormatException | ArrayIndexOutOfBoundsException e) { ok=false; break; }
// Cross-link the facet and section:
// facet.addSection( sections.get(id) ); // no longer necessary because facet sections defined by the facet nodes
sections.get(id).addFacet(facet);
}
*/
// Read the group id:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 2);
int id;
try {
// converts to integer
id = Integer.parseInt(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
// Cross-link the facet and group:
facet.setGroup(groups.get(id));
groups.get(id).addFacet(facet);
}
if (!ok) {
break;
}
// Loop over each region:
for (int i = 0; i < nregions; i++) {
Region region = plc.getRegion(i);
// Read the section id:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 2);
int id;
try {
// converts to integer
id = Integer.parseInt(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
// Cross-link the region and section:
region.setSection(sections.get(id));
sections.get(id).addRegion(region);
// Read the group id and link that group to the node:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
textLine = textLine.trim();
ss = textLine.split("[ ]+", 2);
try {
// converts to integer
id = Integer.parseInt(ss[0].trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
// Cross-link the region and group:
region.setGroup(groups.get(id));
// groups.get(id).setRegion(region);
groups.get(id).addRegion(region);
}
if (!ok) {
break;
}
// ---------- Finish with the rest of the information: ----------
// Read painting colours, etc.:
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
calibrationColor = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
edgeColor = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
// parse from RGB string
defineFacetEdgeColor = new Color(Integer.parseInt(textLine.trim()));
} catch (NumberFormatException e) {
ok = false;
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
pointWidth = Integer.parseInt(textLine.trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
textLine = FileUtils.readLine(reader);
if (textLine == null) {
ok = false;
break;
}
try {
lineWidth = Integer.parseInt(textLine.trim());
} catch (NumberFormatException e) {
ok = false;
break;
}
// Always break from while here:
break;
}
// Close the file:
FileUtils.close(reader);
// Check for a problem:
if (!ok) {
return false;
}
// Reset the FacetModeller plc, section lists and group lists:
controller.resetPLC(plc, merge);
controller.resetSectionVector(sections, merge);
controller.resetGroupVector(groups, merge);
// If it is a large model then don't display anything:
if (plc.numberOfNodes() >= LARGE_MODEL) {
controller.clearGroupSelections();
}
// Reset some other information:
if (!merge) {
controller.setCalibrationColor(calibrationColor);
controller.setEdgeColor(edgeColor);
controller.setDefineFacetEdgeColor(defineFacetEdgeColor);
controller.setPointWidth(pointWidth);
controller.setLineWidth(lineWidth);
}
// Return successfully:
return true;
}
use of geometry.MyPoint3D in project facetmodeller by pglelievre.
the class VOI method getCorners.
public MyPoint3D[] getCorners() {
// Corners will be placed into an array:
MyPoint3D[] corners = new MyPoint3D[8];
corners[0] = new MyPoint3D(x1, y1, z1);
corners[1] = new MyPoint3D(x2, y1, z1);
corners[2] = new MyPoint3D(x1, y2, z1);
corners[3] = new MyPoint3D(x2, y2, z1);
corners[4] = new MyPoint3D(x1, y1, z2);
corners[5] = new MyPoint3D(x2, y1, z2);
corners[6] = new MyPoint3D(x1, y2, z2);
corners[7] = new MyPoint3D(x2, y2, z2);
// Return the corners:
return corners;
}
use of geometry.MyPoint3D in project facetmodeller by pglelievre.
the class VOI method getEdges.
public MyPoint3D[][] getEdges() {
// Edges will be placed into an array:
MyPoint3D[][] edges = new MyPoint3D[N_EDGES][2];
// Edges in x direction:
edges[0][0] = new MyPoint3D(x1, y1, z1);
edges[0][1] = new MyPoint3D(x2, y1, z1);
edges[1][0] = new MyPoint3D(x1, y2, z1);
edges[1][1] = new MyPoint3D(x2, y2, z1);
edges[2][0] = new MyPoint3D(x1, y1, z2);
edges[2][1] = new MyPoint3D(x2, y1, z2);
edges[3][0] = new MyPoint3D(x1, y2, z2);
edges[3][1] = new MyPoint3D(x2, y2, z2);
// Edges in y direction:
edges[4][0] = new MyPoint3D(x1, y1, z1);
edges[4][1] = new MyPoint3D(x1, y2, z1);
edges[5][0] = new MyPoint3D(x1, y1, z2);
edges[5][1] = new MyPoint3D(x1, y2, z2);
edges[6][0] = new MyPoint3D(x2, y1, z1);
edges[6][1] = new MyPoint3D(x2, y2, z1);
edges[7][0] = new MyPoint3D(x2, y1, z2);
edges[7][1] = new MyPoint3D(x2, y2, z2);
// Edges in z direction:
edges[8][0] = new MyPoint3D(x1, y1, z1);
edges[8][1] = new MyPoint3D(x1, y1, z2);
edges[9][0] = new MyPoint3D(x2, y1, z1);
edges[9][1] = new MyPoint3D(x2, y1, z2);
edges[10][0] = new MyPoint3D(x1, y2, z1);
edges[10][1] = new MyPoint3D(x1, y2, z2);
edges[11][0] = new MyPoint3D(x2, y2, z1);
edges[11][1] = new MyPoint3D(x2, y2, z2);
// Return the edges:
return edges;
}
use of geometry.MyPoint3D in project facetmodeller by pglelievre.
the class ChangeNodeSectionClickTask method mouseClick.
@Override
public void mouseClick(MyPoint2D p) {
// Check for the required information:
if (!check()) {
return;
}
if (p == null) {
return;
}
// Get the current section:
Section currentSection = controller.getSelectedCurrentSection();
// Calculate the closest node to the clicked point:
if (!controller.calculateClosestNode(p)) {
return;
}
// just in case the closestNode object gets nullified by a mouse move (not sure if that is possible but better safe than sorry)
Node node = controller.getClosestNode();
if (node == null) {
return;
}
// Check if the node is already a 3D node in the current section:
if (node.getSection() == currentSection && node.isOff()) {
return;
}
// Nullify temporary objects:
// (or else the old closest node point will be painted)
controller.clearClosestNode();
// Check if node is on or off section (it will be changed to off section regardless):
if (!node.isOff()) {
// Ask user for confirmation and calculate 3D point:
int response = Dialogs.confirm(controller, "The node will be changed to a 3D off-section node.", title());
if (response != Dialogs.OK_OPTION) {
return;
}
}
MyPoint3D p3 = node.getPoint3D();
if (p3 == null) {
return;
}
p3 = p3.deepCopy();
// Create a new off-section node object:
Node newNode = new NodeOffSection(p3, currentSection, node.getGroup());
// Replace the old node with the new node:
MergeNodesCommand com = new MergeNodesCommand(controller.getModelManager(), node, newNode, title());
com.execute();
controller.undoVectorAdd(com);
// Enable or disable menu items:
controller.checkItemsEnabled();
// Repaint:
controller.redraw();
}
use of geometry.MyPoint3D in project facetmodeller by pglelievre.
the class DepthSection method imageToSpace.
/**
* Transforms from section image pixel coordinates to real-space measurements for a topography slice
* (horizontal depth-slice, assumed to be in map view with North up, East right).
* @param p2
* @return
*/
@Override
public MyPoint3D imageToSpace(MyPoint2D p2) {
// Check input and calibration:
if (p2 == null) {
return null;
}
if (!isCalibrated()) {
return null;
}
// Calculate some quantities required for interpolation:
MyPoint2D v2 = getClicked1().vectorToPoint(getClicked2());
MyPoint3D v3 = getTyped1().vectorToPoint(getTyped2());
// x and y vary linearly with horizontal and vertical pixel coordinates respectively:
double mx = v3.getX() / v2.getX();
double my = v3.getY() / v2.getY();
double x = getTyped1().getX() + mx * (p2.getX() - getClicked1().getX());
double y = getTyped1().getY() + my * (p2.getY() - getClicked1().getY());
// z is constant across a depth slice:
double z = getTyped1().getZ();
// Return a new MyPoint3D object:
return new MyPoint3D(x, y, z);
}
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