Examples with FieldNameTransformer gov.nih.nci.ctd2.dashboard.api.FieldNameTransformer used on opensource projects

Example 1 with FieldNameTransformer

use of gov.nih.nci.ctd2.dashboard.api.FieldNameTransformer in project nci-ctd2-dashboard by CBIIT.

the class ObservationsAPI method getObservations.

@Transactional
@RequestMapping(value = "{submissionId}/{indexRanges}", method = { RequestMethod.GET }, headers = "Accept=application/json")
public ResponseEntity<String> getObservations(@PathVariable String submissionId, @PathVariable String indexRanges) {
    /* submissionId is not internal ID as other parts of code. it is the identifier as part of stableURL */
    HttpHeaders headers = new HttpHeaders();
    headers.add("Content-Type", "application/json; charset=utf-8");
    Set<Integer> indexes = new HashSet<Integer>();
    try {
        for (String range : indexRanges.split(",")) {
            String[] x = range.split("-");
            if (x.length == 1) {
                int index = Integer.parseInt(x[0]);
                indexes.add(index);
            } else if (x.length == 2) {
                int index1 = Integer.parseInt(x[0]);
                int index2 = Integer.parseInt(x[1]);
                if (index2 <= index1) {
                    log.warn("incorrect ranges syntax:" + indexRanges);
                    return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
                }
                for (int i = index1; i <= index2; i++) {
                    indexes.add(i);
                }
            } else {
                log.warn("incorrect ranges syntax:" + indexRanges);
                return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
            }
        }
    } catch (NumberFormatException ex) {
        log.warn(ex.getMessage());
        return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
    }
    try {
        ObservationItem[] observations = dashboardDao.getObservations(submissionId, indexes);
        log.debug("ready to serialize");
        JSONSerializer jsonSerializer = new JSONSerializer().transform(new ImplTransformer(), Class.class).transform(new SimpleDateTransformer(), Date.class).transform(new FieldNameTransformer("class"), "clazz").transform(new FieldNameTransformer("class"), "subject_list.clazz").transform(new FieldNameTransformer("class"), "evidence_list.clazz").transform(new FieldNameTransformer("subject_uri"), "subject_list.uri").transform(new ExcludeTransformer(), void.class).exclude("class").exclude("evidence_list.evidenceName").exclude("evidence_list.columnName").exclude("subject_list.columnName").exclude("subject_list.synonyms").exclude("subject_list.xref").exclude("uri").exclude("id");
        String json = "{}";
        try {
            json = jsonSerializer.deepSerialize(observations);
        } catch (Exception e) {
            e.printStackTrace();
            return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
        }
        return new ResponseEntity<String>(json, headers, HttpStatus.OK);
    } catch (Exception e) {
        e.printStackTrace();
    }
    return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
}

Example 2 with FieldNameTransformer

use of gov.nih.nci.ctd2.dashboard.api.FieldNameTransformer in project nci-ctd2-dashboard by CBIIT.

the class ECOTermAPI method getECOTermFromCode.

@Transactional
@RequestMapping(value = "{ecocode}", method = { RequestMethod.GET }, headers = "Accept=application/json")
public ResponseEntity<String> getECOTermFromCode(@PathVariable String ecocode) {
    HttpHeaders headers = new HttpHeaders();
    headers.add("Content-Type", "application/json; charset=utf-8");
    ECOTerm ecoterm = dashboardDao.getEcoTerm(ecocode);
    if (ecoterm == null) {
        return new ResponseEntity<String>("{\"name\":\"(not available)\"}", headers, HttpStatus.OK);
    }
    log.debug("ECO term name: " + ecoterm);
    // CTD2Serializer.createJSONSerializer();
    JSONSerializer jsonSerializer = new JSONSerializer().transform(new FieldNameTransformer("name"), "displayName");
    String json = jsonSerializer.deepSerialize(ecoterm);
    return new ResponseEntity<String>(json, headers, HttpStatus.OK);
}

Example 3 with FieldNameTransformer

use of gov.nih.nci.ctd2.dashboard.api.FieldNameTransformer in project nci-ctd2-dashboard by CBIIT.

the class ObservationAPI method getObservation.

@Transactional
@RequestMapping(value = "{id}", method = { RequestMethod.GET }, headers = "Accept=application/json")
public ResponseEntity<String> getObservation(@PathVariable String id) {
    HttpHeaders headers = new HttpHeaders();
    headers.add("Content-Type", "application/json; charset=utf-8");
    ObservationItem observation = dashboardDao.getObservationInfo("observation/" + id);
    if (observation == null) {
        return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
    }
    log.debug("ready to serialize");
    JSONSerializer jsonSerializer = new JSONSerializer().transform(new ImplTransformer(), Class.class).transform(new SimpleDateTransformer(), Date.class).transform(new FieldNameTransformer("class"), "clazz").transform(new FieldNameTransformer("class"), "subject_list.clazz").transform(new FieldNameTransformer("class"), "evidence_list.clazz").transform(new FieldNameTransformer("subject_uri"), "subject_list.uri").transform(new ExcludeTransformer(), void.class).exclude("class").exclude("evidence_list.evidenceName").exclude("evidence_list.columnName").exclude("subject_list.columnName").exclude("subject_list.synonyms").exclude("subject_list.xref").exclude("uri").exclude("id");
    String json = "{}";
    try {
        json = jsonSerializer.deepSerialize(observation);
    } catch (Exception e) {
        e.printStackTrace();
        return new ResponseEntity<String>(headers, HttpStatus.NOT_FOUND);
    }
    return new ResponseEntity<String>(json, headers, HttpStatus.OK);
}